Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq178 170 2e-37 >seq178 Length=73968 Score = 170 bits (188), Expect = 2e-37 Identities = 344/505 (68%), Gaps = 14/505 (3%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| ||||| ||||||||||| ||||| || ||||| || | |||| || | Sbjct 5516 TTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAAAT 5457 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAA---ATATCTTAGAGTACCCCAGTTCCGTAA 16028 ||||||||||||| ||||| ||||| | | || | || ||| || | Sbjct 5456 CCATAAAATCAAAAGGATTCT---CTGAATTATACAATTTTGCTCCACCAAGTGCCACTA 5400 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATA 16087 ||||||||| ||||||||||| ||||||| |||||| | ||| || || || || Sbjct 5399 ATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG-TTCATACCAATT 5341 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || || | |||| ||||||||||| ||||||||| ||||||||| || Sbjct 5340 AAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTATA 5281 Query 16148 ATA---TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 ||| || | | |||| || ||| | | || || | || | ||||| Sbjct 5280 ATAGCTTCTACAGTTTTTGTTGGAGGTCGTGCACGA---AGATGAGTGAATAAGAGACAT 5224 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || || ||||| | |||||| |||| || |||||||||||||||||||| ||| Sbjct 5223 GCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCT 5164 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 ||||| |||||| |||||||||||| || || | || || | || ||||||||||| Sbjct 5163 GGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATT 5104 Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATC 16384 || ||||||| ||||| || | | ||||| || | | || || |||| |||| Sbjct 5103 CCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGATTCCTTATCGGAAATC 5044 Query 16385 CATTTCTGTACCCATTCGGCTTTTT 16409 ||| | |||| || ||||||| Sbjct 5043 CATCGAAGAGCCCAATCCGCTTTTT 5019 Score = 118 bits (130), Expect = 1e-21 Identities = 202/289 (70%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| | |||||||| | |||||||||||| || || || || || |||||| Sbjct 4877 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 4818 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAATCGTTCCGCCA 16589 |||||||| || |||| || || | ||||| ||||| || ||||| |||||| | | Sbjct 4817 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTAC-TAAAA-CGTTCCACTA 4760 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT 16649 || ||||| || ||||| || || ||||| || ||||| | ||| ||| || Sbjct 4759 AATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGA 4700 Query 16650 ATTTTTCGTCAGATGTAAGAATA---TGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 ||||||| ||| |||| || | |||||| || | ||| ||||| | || |||| Sbjct 4699 ATTTTTCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTT 4640 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 | || |||||||| ||| | |||||||| ||||||| ||| || Sbjct 4639 CCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511348862244640