Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq49 134 1e-26 >seq49 Length=212187 Score = 134 bits (148), Expect = 1e-26 Identities = 177/239 (74%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 101676 TTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACT 101735 |||||| ||||| ||| ||||| ||| || |||| ||| || || ||||| ||||| | Sbjct 169444 TTTTAA-AGCATTAATATGATCATTATATATATGAGTATCACCCATGGTATGAATAAATT 169502 Query 101736 CTCCAGGCACTAGATTA-GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCA 101794 | ||||| |||| | || |||||||||||||| |||||| | || |||||| ||| Sbjct 169503 CACCAGG-ACTACAACCCGTTACATGAGCAATCATATGAGTTAATATAGCATAGCTTGCA 169561 Query 101795 ATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGA-AAG 101853 ||||||||||| || || | || | |||| |||||||||||| || |||| || || Sbjct 169562 ATGTTAAATGGTACACCAAGTCCAACATCACATGATCTTTGATAAAGAAGACACGATAAT 169621 Query 101854 CTTTCC--ATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTT 101910 |||| | || | ||||| ||||| | || | |||||| || || || ||||||| Sbjct 169622 CTTTTCGTATTTGATACATAGAATTGGCAAAACATATGACATGGTGGTAATGCCATTTT 169680 Score = 93.3 bits (102), Expect = 3e-14 Identities = 222/333 (67%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAA 101985 ||||||||||| | | || | |||||| | || | |||| || |||| || | Sbjct 169770 ATTCCAAGCACTGAGAATGATTCGTCTATCATTTGGAGTATTTTTAATTATATCGATGAC 169829 Query 101986 CTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCG---CCCAACACCTTTATATTC 102042 || || | ||| ||||| |||| || | ||||| || | || | | | || || Sbjct 169830 CTCTTGCAGTTGATCAACACCTTTACCAGTGTAATC-CGTATCGCA--ATCAATGTACTC 169886 Query 102043 TGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTC 102102 || || ||||| ||||| || |||||||| ||||| || | ||| ||||| | ||| | Sbjct 169887 AGCACCAAAATGTCTCCATTGGAATCCATAAACAGGACCCAAATCACCTTCTTTTCTATG 169946 Query 102103 ATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCC 102162 | | |||| |||||| ||| || | ||| ||||| | |||||||| || | || Sbjct 169947 TGATAGCCCAATTTTATCCAAATATTCACGAGAACCATTACCGTCCCAAATATGAATACC 170006 Query 102163 AGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAAC 102222 | | | || | |||||| | ||| ||| | |||||||| || | |||||| | Sbjct 170007 TTTTTCGGTTAAATGTTTGCTATTTGTATTACCTTTAATAAACCATAATAATTCTTCTAT 170066 Query 102223 AACACCTCTCCAAAATACTCTCTTAGTAGTTAA 102255 || | | | | ||| || | |||||| ||||| Sbjct 170067 AATAGCACGCGTAAAAACGCGCTTAGTTGTTAA 170099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361206063017252