Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1373 338 7e-88 seq178 179 4e-40 seq452 102 1e-16 >seq1373 Length=28076 Score = 338 bits (374), Expect = 7e-88 Identities = 675/989 (68%), Gaps = 16/989 (2%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CACATCAACG 54008 |||||| || || |||||||||| || |||||| |||| ||||| || || ||| Sbjct 3530 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 3471 Query 54009 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 3470 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 3413 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 3412 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 3353 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | ||| |||| |||||||| ||| || || || | | | || || |||||||||||| Sbjct 3352 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 3293 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || ||||| | |||||||| || ||||||||||| | ||||| |||||||| ||||| Sbjct 3292 CCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTT 3233 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 3232 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 3173 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || ||||| | ||||| || | ||||||| ||| || ||||||||||| ||| Sbjct 3172 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 3113 Query 54368 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||||| |||||| |||| ||||| |||||||| || || | ||| | | | || Sbjct 3112 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 3054 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 3053 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 2994 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || || ||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 2993 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 2934 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || || | || | | || |||| | | || ||| |||| | ||| Sbjct 2933 ATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 2874 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 |||||| |||||||| || ||| | | |||| || ||||| || || || ||||| Sbjct 2873 TTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTT 2814 Query 54667 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATCGGAGAATGTT 54722 ||| | ||||| | ||| || ||| || ||||| || | | ||| Sbjct 2813 TTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 2758 Query 54723 TCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC-ACTTCACTAAATAGtttt 54781 |||| |||| ||||| | ||| ||| | | || ||||| | || | ||| | |||| Sbjct 2757 TCCCTGTTTTCGGATTTATATAATTATAAAGAT-CTTCAACAACATTGGAAAAAACTTTT 2699 Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841 || |||||||| || ||||| || || || || | ||| || || | |||||| |||||| Sbjct 2698 TTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGA 2639 Query 54842 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTT 54901 |||| || || | || || |||| || | || | | || ||||| || || | Sbjct 2638 TGTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 2579 Query 54902 ACTCCATTATATATTCCTTGGATAACCTT 54930 || || | ||| | |||| || ||||| Sbjct 2578 ACACCTTGATAAACTCCTGAAATGACCTT 2550 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 ||||||||| |||||| ||| |||| ||||| || || || |||| | || | Sbjct 3861 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 3802 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 3801 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 3742 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 || ||||| | ||| || || || || |||| ||||| ||||| ||||||||| Sbjct 3741 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 3682 Query 53870 TCTATAATCGCTTTCCAGAC 53889 || | ||| ||| ||||||| Sbjct 3681 TCAAGAATTGCTGTCCAGAC 3662 >seq178 Length=73968 Score = 179 bits (198), Expect = 4e-40 Identities = 218/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 4883 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4824 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || |||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4823 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4764 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4763 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4704 Query 24576 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 24631 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 4703 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4645 Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 4644 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4591 Score = 176 bits (194), Expect = 5e-39 Identities = 322/463 (70%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 5530 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5471 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 ||| || ||||| ||||| | ||||| |||||| | | ||| | Sbjct 5470 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAAT-TTTGCTCCAC 5412 Query 23951 CAATT--CAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCAT-TTCACA 24007 ||| | || ||| |||||||| || ||||| || |||||| ||||||| | ||| | Sbjct 5411 CAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG 5353 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||| || || | |||||||| | || | || | |||||||||||| || | || Sbjct 5352 -TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAAC 5294 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAA 24126 ||| || | |||||||| | ||| |||| | ||| | | || || ||| | | Sbjct 5293 CGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTGA 5235 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | | |||||| ||||| || || | || || |||| | ||||| ||||||||||| Sbjct 5234 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 5175 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | ||| ||||| | || | || || | |||||| || ||||| || | ||||| Sbjct 5174 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 5115 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289 ||||||| |||||||| || || ||||| || | ||| | ||| Sbjct 5114 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTC 5072 >seq452 Length=54095 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 54374 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 54433 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 32564 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 32505 Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCG 54493 ||||| || || ||| || || ||||| |||| || || | || ||| || || || Sbjct 32504 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 32445 Query 54494 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 54553 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 32444 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 32385 Query 54554 GGTCTTTCAAC 54564 ||||||||||| Sbjct 32384 GGTCTTTCAAC 32374 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 33692 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 33633 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 53676 | |||||| | || | | || ||||| | | || | || || | |||||||| Sbjct 33632 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 33573 Query 53677 -TTGTCCAT---CTATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCT 53731 || || || |||| ||||| | |||| ||| || || | ||||||||||||| Sbjct 33572 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 33513 Query 53732 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 33512 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 33453 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 53837 || | ||| | ||||||| |||| ||||| | ||| |||||| Sbjct 33452 CCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATC--TATAAA 33409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593645514576960