Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq100 95.1 1e-14 seq1291 87.8 1e-12 seq1502 84.2 2e-11 >seq100 Length=143921 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| |||||| ||| || || | Sbjct 58662 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 58603 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | ||||||| | || ||||| |||||| | || |||||| Sbjct 58602 GATACCATAGACCAAGTTAAAGCAAAGA-TTCAAGATAAGGAAGGTATTCCTCCAGATCA 58544 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | ||||| || || ||||||||||||||| | ||| | | ||||| || Sbjct 58543 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAA 58484 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||||||||| ||||||||||| || Sbjct 58483 TATTCAAAAAGAATCTACTCTCCA 58460 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| ||||| ||| || || | Sbjct 58890 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 58831 Query 25095 GAGACGGTGGC-CGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | ||||||| | || ||||| |||||| | ||| |||||| Sbjct 58830 GATACCATAGATCAAGTTAAAGCAAAGA-TTCAAGATAAGGAAGGTATCCCCCCAGATCA 58772 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | ||||| || || ||||||||||||||| | ||| | | || || || Sbjct 58771 ACAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAA 58712 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || | || | || ||| |||| || Sbjct 58711 TATTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGG 58664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| |||| || ||||| || || ||| || || | Sbjct 59346 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 59287 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | ||||||| | || |||||||||||| | ||| |||||| Sbjct 59286 GATACCATAGACCAAGTTAAAGCAAAGA-TTCAAGATAAAGAAGGTATCCCCCCAGATCA 59228 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | ||||| || || |||||||| |||||| || || | || || || Sbjct 59227 ACAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAA 59168 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| ||||| || | || | || ||| |||| || Sbjct 59167 CATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 59120 >seq1291 Length=36373 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||| |||||||| || | |||||| | || || ||||||||||| ||| ||| Sbjct 20007 TAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAA 19948 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 || || | | | |||| |||||||| ||||||||||| | ||| | Sbjct 19947 GTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGG 19888 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGA 25207 |||||||| | | || ||||| || ||||| || |||||| | ||| | |||| Sbjct 19887 ATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCGA 19830 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || | ||| |||| | || ||||| || || Sbjct 19829 TTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 19776 >seq1502 Length=20690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || | || || ||||| ||||| ||| || || || Sbjct 12771 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 12830 Query 25095 GAGACGGTGG-CCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | | |||| || | || || |||||||| | ||| ||||| Sbjct 12831 GATACCATTGACCAAGTTAAAGCGAAGA-TTCAAGACAAAGAAGGCATTCCCCCGGATCA 12889 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | |||||||| || ||||||||||||||| || || | |||||||| Sbjct 12890 GCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAA 12949 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||| || ||||| || | ||| | || ||| |||| || Sbjct 12950 TATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 12997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410745472480328