Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1195 125 6e-24 seq1291 122 8e-23 seq100 109 5e-19 seq2251 91.5 1e-13 >seq1195 Length=66079 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| ||||| ||| | || || |||||| || ||||| ||| Sbjct 11667 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCA 11608 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | |||||||| ||||| || || || || |||||||| ||| |||||| ||| Sbjct 11607 GCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTT 11548 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || || |||| ||| |||| | ||| || || | ||| | ||||||||||| || || Sbjct 11547 ACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGTGTC 11488 Query 118722 TTTACAAAAATCTGCAT 118738 ||||| || || ||||| Sbjct 11487 TTTACGAAGATTTGCAT 11471 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||| |||||||||||||| ||||| || | || || |||||| Sbjct 11908 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 11849 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || ||| | |||||||| |||||||| || || || || || |||||| Sbjct 11848 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 11789 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| ||| || || |||| ||| || | ||| || || | || | ||||| Sbjct 11788 AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 11729 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| |||||||| ||||| Sbjct 11728 TCCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||| ||||| ||||| | ||| || ||| || | || || ||| Sbjct 12123 GTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCA 12064 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||| |||||||| ||||| || ||||| || ||| |||||| |||| Sbjct 12063 GCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTA 12004 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 ||||| || | ||| || | || | |||||||| | ||| | ||| || || || || || Sbjct 12003 ACCTGATCAATGGTATCAGATGAT-TCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGT 11945 Query 118721 TTTTACAAAAATCTGCAT 118738 |||||||||||| ||||| Sbjct 11944 TTTTACAAAAATTTGCAT 11927 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || | || | || | || ||||||||||||||||| ||||| Sbjct 11471 TACCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTG 11412 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || ||||| |||||| | || ||||| ||||| || || | Sbjct 11411 AAAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGG 11352 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||||| |||||| || || | ||||| | || | Sbjct 11351 GAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAA 11292 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | ||| | || || ||||| || ||||| || || || |||||| Sbjct 11291 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 11242 >seq1291 Length=36373 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||| | | |||||||| | ||| || ||||||||||| ||||||||| Sbjct 19776 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCG--G 19833 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| ||| ||| || | |||||| ||||| | || | ||| || ||||| || | Sbjct 19834 AAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 19893 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| |||||||| ||| || | |||| ||| || | || || | Sbjct 19894 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 19953 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | || | ||||| || || || ||||| |||||||| |||||| Sbjct 19954 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 20003 >seq100 Length=143921 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||| ||||||||||| || ||||| | ||| || ||| || | ||| Sbjct 58460 TGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTGT 58519 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || |||||||| ||||| || || ||||| ||| ||| ||| Sbjct 58520 TTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTT 58579 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | ||| || | | ||| || || | ||| | ||||| ||||| Sbjct 58580 GCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTG 58639 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| ||||| Sbjct 58640 AGGGTCTTGACGAAAATTTGCAT 58662 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||||||||| || ||||| || ||| ||| ||| || | ||| Sbjct 59372 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGT 59431 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| ||||| || || ||||| ||| ||| ||| Sbjct 59432 TTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTT 59491 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | || || || |||||| || | ||| | ||||| || || Sbjct 59492 GCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTA 59551 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 59552 AGGGTCTTGACGAATATTTGCAT 59574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || |||||||||||||| || || || || || ||| || | ||| Sbjct 59144 TGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTGT 59203 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| || || || || || || ||| ||| ||| Sbjct 59204 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTT 59263 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | ||| || | | ||| || || | || | ||||| |||||| Sbjct 59264 GCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTC 59323 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || ||||| ||||| Sbjct 59324 AGCGTTTTAACGAAAATTTGCAT 59346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||||||||| || ||||| || || || ||| || | ||| Sbjct 58916 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGT 58975 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| ||||| || || || || ||| ||| || Sbjct 58976 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTC 59035 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || || || | ||| || | | |||||| || | || | ||||| ||||| Sbjct 59036 GTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTG 59095 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| ||||| Sbjct 59096 AGGGTCTTGACGAAAATTTGCAT 59118 >seq2251 Length=10798 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118539 ATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTT 118598 ||||| |||||| || || || ||||| |||| || ||| ||| || | || || Sbjct 7701 ATTGTGCTCTCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGACTT 7760 Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| | || | ||| || ||| || || || || ||||||||| || || | Sbjct 7761 CCAGCAAAAATAAAACGTTGACTATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGCAT 7820 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 ||||| | || ||| || | ||| ||||| | ||| |||||||| ||||| || Sbjct 7821 TTAACTAGGCTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGT 7880 Query 118719 GTTTTTACAAAAATCTGCATGGC 118741 ||||||||||| | ||||||||| Sbjct 7881 GTTTTTACAAATACCTGCATGGC 7903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433776194518384