Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1291 123 4e-23 seq100 113 7e-20 seq526 100 4e-16 seq1195 96.9 5e-15 seq1113 93.3 6e-14 seq322 91.5 2e-13 seq1502 89.7 8e-13 >seq1291 Length=36373 Score = 123 bits (136), Expect = 4e-23 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| ||||| || |||||||| ||||| ||||| ||||| | | | ||| || Sbjct 19793 TACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTC 19852 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| || || | ||| |||||||| || ||||||||||||||||| Sbjct 19853 TAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTG 19912 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| |||||| ||||||| || || ||||| Sbjct 19913 AATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTT 19972 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAAAATAT-TTGTTaaaaaaaa 146306 ||| || | |||||||| || |||||||| | ||| |||||| | ||| ||||||| Sbjct 19973 ACCAGTAAGTGTTTTAACAAAAATTTGCATGT--TTAAAAAAATTTATTGGGGAAAAAAA 20030 Query 146307 TAATT 146311 | ||| Sbjct 20031 TTATT 20035 >seq100 Length=143921 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||| | ||| | |||||||||||| ||||||||||| || Sbjct 58436 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 58495 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || |||||||| ||||| || ||||| | ||||||||| |||||| Sbjct 58496 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 58555 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 58556 ATACCTTCCTTATCTTG 58572 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| |||||||||||||| Sbjct 58892 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 58951 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| ||||| || ||||| | ||| ||||| ||||| Sbjct 58952 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 59011 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 59012 ATACCTTCTTTATCTTG 59028 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| |||||||||||||| Sbjct 59348 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 59407 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| ||||| || || || | ||| ||||| |||||| Sbjct 59408 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 59467 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 59468 ATTCCTTCCTTATCTTG 59484 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| || ||||| ||||| Sbjct 59120 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 59179 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| ||||| || ||||| | ||| ||||| || || Sbjct 59180 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 59239 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| || |||||| Sbjct 59240 ATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACT 59299 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||||||||| || | ||||||| ||| |||||||| Sbjct 59300 TCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 >seq526 Length=44740 Score = 100 bits (110), Expect = 4e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTT-TAGATATATTATAATCTGA 146109 ||||| | ||||| | ||| | ||| || ||||| |||| | || |||||||||||||| Sbjct 29529 CCACCACGTAGTCTAAGTACAAGATGCAACGTAGACTCTTCTTGA-ATATTATAATCTGA 29587 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||| | | ||| || ||||| || ||||||||||| | | |||||| || ||||| Sbjct 29588 TAAAGTTTTTCCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGG 29647 Query 146170 AATTCCTTCTTT 146181 ||| |||||||| Sbjct 29648 AATGCCTTCTTT 29659 >seq1195 Length=66079 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| |||||||| || |||||||| |||||||| | | ||| || ||||| || || Sbjct 12124 AGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACC 12065 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| |||||||| | ||||||||| ||||| || || ||||||||||| Sbjct 12064 AGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTG 12017 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | ||| | ||| | ||| || ||||| || |||||||||||| Sbjct 11469 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 11410 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | || || | |||||| ||||| ||||| | | |||||| || || ||| Sbjct 11409 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 11350 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| ||| || ||| ||| ||| Sbjct 11349 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 11290 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||| || || || | ||||||| ||| |||||||| Sbjct 11289 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 11243 >seq1113 Length=64455 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | ||||||||| ||||||| || || || | ||||||| ||||| Sbjct 45694 CCACCCCTTAATCTTAATACTAAATGTAGCGTGGACTCAACACATATATTGTAATCACTT 45635 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || | ||| || ||||||||||| |||||||| ||||| || || Sbjct 45634 AAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGT 45575 Query 146171 ATTCCTTCTTTATC 146184 || |||||||| || Sbjct 45574 ATACCTTCTTTTTC 45561 >seq322 Length=141587 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||||||||| ||||||| ||||||||| | ||||||||||||| Sbjct 130980 CCACCTCTTAATCTTAATACTAAATGTACAGTAGATTCATGTTGTATATTATAATCTTCT 130921 Query 146111 AGAGTTCTGCTATCATCT---AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||| ||||||| | |||||| || || | || ||| | ||| ||||| ||| Sbjct 130920 AAAG---TGCGATCATCTTCAAGTTGTTTACCGGCCATAAGCAAACGTTGTTGATCTGGA 130864 Query 146168 GGAATTCCTTCT 146179 || || |||||| Sbjct 130863 GGTATACCTTCT 130852 >seq1502 Length=20690 Score = 89.7 bits (98), Expect = 8e-13 Identities = 124/182 (68%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| |||||||| | || | | ||| || |||||||| || ||||| ||||| | | Sbjct 12952 ATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGT 12893 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||||||||| ||||| |||||||| ||||| ||| Sbjct 12892 TGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTA 12833 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| |||||||| || || || |||||||| || | || |||| ||| |||||| Sbjct 12832 TCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGC 12773 Query 146276 AT 146277 || Sbjct 12772 AT 12771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743431117091840