Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq178 253 2e-62 >seq178 Length=73968 Score = 253 bits (280), Expect = 2e-62 Identities = 373/527 (71%), Gaps = 6/527 (1%) Strand=Plus/Minus Query 13890 CTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAG 13949 || ||||| ||||| || ||||||||| || || | |||||||||||| || | Sbjct 5540 CTCTGTTACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTG 5481 Query 13950 TTTTACCTTCCAGTGATATATTT---TCCATAAAATCAAATGGATTTGTTGACATAAACA 14006 ||||||||| || | || || |||||||||||||| ||||| ||| || ||| Sbjct 5480 TTTTACCTT---GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA 5424 Query 14007 CTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACA 14066 ||| | | ||| ||| | | || ||||||||| || | || |||||||||| || Sbjct 5423 ATTTTGCTCCACCAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCA 5364 Query 14067 TTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTT 14126 |||||| |||||||| |||| || || || | | | ||||||||||||| || Sbjct 5363 TTAAATTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTT 5304 Query 14127 CTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTA 14186 |||| | || || || ||||||| | | ||| | | ||| | | Sbjct 5303 CTATTGTAACCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCGTGCACGAA 5244 Query 14187 GATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTT 14246 |||| | || | | ||| |||||||||||||| | || ||||||| | ||| |||| Sbjct 5243 GATGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTT 5184 Query 14247 CGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGA 14306 |||| ||||| |||||||||||||||| ||||| ||| ||||||||||| |||| |||| Sbjct 5183 CGTTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGA 5124 Query 14307 ATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG 14366 | | ||| |||||||||||||| ||||| || |||||||||| | ||||| |||| | Sbjct 5123 AAGCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATG 5064 Query 14367 ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt 14413 | | || || | || |||||| |||||| || | ||||||| Sbjct 5063 AAGATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 5017 Score = 143 bits (158), Expect = 3e-29 Identities = 192/264 (73%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 |||||||| || || || ||||| || |||||||| |||||||||||||| |||||| Sbjct 4853 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4794 Query 14558 GACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 | ||| || || | | ||||| | ||| | ||||||||||| || |||||||| Sbjct 4793 GGAATTTGGACTTCATTACTAAAA-CGTTCCACTAAATTTTCATTGACAATACCATCCGA 4735 Query 14617 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT--- 14673 || ||||| || ||||| | || ||||||| ||| ||||||| | | ||||| Sbjct 4734 GGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATA 4675 Query 14674 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAAC 14733 | |||||| | |||||| ||||| || ||||| ||||| |||||||| ||| | Sbjct 4674 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 4615 Query 14734 AGCTTTTTTATACATTACCCATAT 14757 || ||||| |||||| ||| || Sbjct 4614 GGCCTTTTTGTACATTTGCCAGAT 4591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482283787411360