Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1291 111 1e-19 seq100 111 1e-19 seq1195 98.7 8e-16 >seq1291 Length=36373 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | |||||||| ||| | |||||||||||||||||| ||||| |||| Sbjct 19776 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 19835 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || ||||| || ||| | || | | |||||||||| ||| Sbjct 19836 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 19895 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||||| || ||||| | | | || || | || | Sbjct 19896 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 19955 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 || | || ||| |||| || || | |||||| |||||||||||||| |||||| Sbjct 19956 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAA 20009 >seq100 Length=143921 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || || ||||||||||||||||| ||||| | || ||| || |||| Sbjct 59135 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 59194 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || |||||||| || || |||| | | ||||||||| ||| | ||||| ||||| Sbjct 59195 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCT 59254 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||| || || || | | || ||| || ||| ||||| ||||| | Sbjct 59255 TGAATCT-TTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGT 59313 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||||| ||||| || ||||||||||| Sbjct 59314 TTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || ||||||||||||||||| || || || | || || | |||| Sbjct 59363 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 59422 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || || |||| | | ||||||||| || | ||||||||||| Sbjct 59423 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 59482 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||| || || || ||| ||| ||| || |||| ||||| ||| ||| | Sbjct 59483 TGAATCT-TTGCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGT 59541 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || || | || || || || |||||||| Sbjct 59542 TTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 59574 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | || || |||||||| |||||||| || ||||| | | || | ||| Sbjct 58678 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 58737 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||||||| || || |||| | | ||||||||| ||| | ||||||||||| Sbjct 58738 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATC 58797 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||| | |||| || || || | | || ||| || |||| ||||| || || Sbjct 58798 TTGAATCT-TTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTG 58856 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| | || || || ||||||||||| Sbjct 58857 TTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 58890 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | |||||| | || || || |||||||||||||| || || || | Sbjct 58436 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 58495 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||||||| || || |||| | | ||| ||||| || Sbjct 58496 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 58555 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | |||| || || || | | || ||| || ||| Sbjct 58556 ATACCTTCCTTATCTTGAATCT-TTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 58614 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||| || |||| ||||| | || || || ||||||||||| Sbjct 58615 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 58662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || ||||||||||||||||| || || || | || || || |||| Sbjct 58907 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 58966 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || |||||||| || || |||| | | ||||||||| || | ||||| ||||| Sbjct 58967 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCT 59026 Query 18234 GCAAT-----TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGA 18288 ||| || || ||||| || || || ||| || |||| ||||| || | Sbjct 59027 TGAATCTTCGTTTTTACTTGATCTATG-----GTATCAGAGGACTCGACTTCAAGAGTAA 59081 Query 18289 TGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||| ||||| | || || || ||||||||||| Sbjct 59082 TTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 59118 >seq1195 Length=66079 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || |||| |||||| | ||||| ||||| |||||||||||||| || || | Sbjct 11469 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 11410 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||| | ||||||||| || | ||||| | ||| || || ||| Sbjct 11409 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 11350 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| |||| || || || ||| |||||| | || Sbjct 11349 ATTCCTTCTTTGTCTTGAATTT-TTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAAC 11291 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| | || ||||| | ||||| || || |||||||| Sbjct 11290 TTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 11243 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || |||||||||||||| |||||||||| | ||| | ||| || | |||| Sbjct 11673 TGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGT 11614 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT-- 18240 || || || | || || | ||| || || ||| | || |||||||| ||||| Sbjct 11613 TTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTG 11554 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 ||| || || || | | || || || ||| || | ||||||| ||||||||| Sbjct 11553 GTT--TTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGG 11496 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 | | ||| ||||| || |||||||| Sbjct 11495 TGAGTGTCTTTACGAAGATTTGCAT 11471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| |||||||||||||| ||||| || || | | || || |||| Sbjct 12138 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 12079 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || || | || | | ||| ||||| || | || || ||||| Sbjct 12078 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 12019 Query 18234 GCAATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||||| ||| || ||||| ||| || ||| | ||| |||| ||| || Sbjct 12018 TGAATTTTGGTT--TTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCG 11961 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || | ||||||||||||||||||||| Sbjct 11960 TCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 11927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379296602389740