Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1195 107 2e-18 >seq1195 Length=66079 Score = 107 bits (118), Expect = 2e-18 Identities = 169/239 (71%), Gaps = 5/239 (2%) Strand=Plus/Plus Query 24824 TTAACA-TCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTC 24882 |||||| ||||||| || || ||||||||| | ||||| || || || ||| | || || Sbjct 11234 TTAACAATCATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTT 11293 Query 24883 GAATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCG 24942 ||||| ||||| | | || ||||| | ||||||| | |||||||| | || Sbjct 11294 GAATCTTCCGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCC 11353 Query 24943 GTTGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGA--TTCCATGACTATGA 25000 |||||||||||| | || | || ||||||||||| ||||| || || | | Sbjct 11354 CCAGACCAGCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCA 11413 Query 25001 ACGATTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||||| | ||| || |||||| | || |||||| |||| | ||| | ||||||||| Sbjct 11414 --GATTATAACATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGGT 11470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418251734483840