Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1373 224 9e-54 seq178 176 4e-39 seq452 100 3e-16 >seq1373 Length=28076 Score = 224 bits (248), Expect = 9e-54 Identities = 469/695 (67%), Gaps = 4/695 (1%) Strand=Plus/Minus Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 ||| |||| ||||| ||||| ||| || ||| ||| ||| | || | ||| Sbjct 3527 AAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACTCCA 3468 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 | |||| | ||| || | || |||||| | ||| | ||||| | |||| |||||| Sbjct 3467 ATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAAATAA 3408 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 ||| | | | |||||| || || ||| ||| |||| | |||||| || || Sbjct 3407 ATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAAAAAT 3348 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 |||| ||||| | ||||| |||||| | | || || || | ||| | ||||| || Sbjct 3347 GTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTCCTTG 3288 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || || ||||||| | || |||||||| | | |||||| || | || ||||| || | Sbjct 3287 ATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTGAATA 3228 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTAT 38300 || ||| | || | ||||||| || | || || || ||| || || || || Sbjct 3227 ACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACACCAAT 3168 Query 38301 TCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTAT 38360 ||||||||| || || || | |||||| ||| || |||||| | || || ||||| Sbjct 3167 ACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCTCTAT 3108 Query 38361 ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGC 38420 ||||| || || | || | ||||||||| || | |||||| || || || || Sbjct 3107 TGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTGCCAGC 3048 Query 38421 GTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTC 38480 ||||| || || |||||||| || | || | ||||| |||| ||| || ||||| Sbjct 3047 ATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAAGTTTC 2988 Query 38481 TATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTG 38540 || || | || |||||| | |||||||| || | | ||| | ||| ||||||||||| Sbjct 2987 AATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATATGTTG 2928 Query 38541 TGGTCTTTCTATTATTTTATTATTCTGTT--TAAGTAGATACGATTTTTCTAATGTTTTT 38598 || | || | ||| | || || ||| ||||| ||| |||| | ||||| Sbjct 2927 GGGACGCTCGGCAACTTT-TCCACCTATTCGTAA-AAGATAAGATCTTTCAAGAGTTTTA 2870 Query 38599 ATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 | |||||||||| ||||| |||||||||||| || Sbjct 2869 AATCCAAAATAATTATATTTATAATCTCTATCATA 2835 Score = 123 bits (136), Expect = 2e-23 Identities = 233/338 (69%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 37129 GGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATAT 37188 || || |||| ||||| || |||| | || | || | || || ||||| ||||| Sbjct 4558 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 4499 Query 37189 GGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCT 37248 ||||||| | |||||| | |||||||| || ||||||||||||||||||||||| Sbjct 4498 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 4439 Query 37249 ATTAGAAGGCTATTTCTCAATCCATGTGTATTA-ATTCTCTTTTTTAGTTCATTCCAATC 37307 | | | ||||| | |||||| | | | ||| | | ||| | ||||||||| Sbjct 4438 AGCAATAATGAATTTCGTACACCATGT-TCTGATATTTTTTGTTTCAACAAATTCCAATC 4380 Query 37308 CCATAAATCTGTTGGGT--TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCT 37365 ||||||||| || || | | || ||||||||| ||||||| ||| ||||| | Sbjct 4379 CCATAAATCAGTAGGCTCAACATT--CCACATATCGTATTGTAAAATGCCTTTGGAAACC 4322 Query 37366 GGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCT 37425 || || | | ||| | |||||| || ||| | ||| | |||||| || | |||| Sbjct 4321 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 4262 Query 37426 AGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 | ||| ||| ||| ||||| || || ||||| |||| Sbjct 4261 AATGCACCATGATACATTGTCTCAAATATTTGCTTATT 4224 Score = 98.7 bits (108), Expect = 9e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 |||||||||||||||||||| | | | ||| | |||||||||||| | |||||| Sbjct 3831 TTACATACAGCAACTTCATCCGGGCTCGAATATTCAACAATCTCTGTACACAAATTACTA 3772 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 || | ||||| || | ||| |||||| ||||| ||||||||||||||| || || Sbjct 3771 CATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTGTAGAGC 3712 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGC 37886 ||||| || || || ||| || || | || | ||| | | |||| | |||| || Sbjct 3711 ATATATGGTGTACCCGTTTCGATCTGGGATTCAAGAATTGCTGTCCA-GACTTTCTGAGC 3653 Query 37887 TTTAACGA 37894 |||||||| Sbjct 3652 TTTAACGA 3645 >seq178 Length=73968 Score = 176 bits (194), Expect = 4e-39 Identities = 307/441 (70%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || || ||| ||| || ||||| || ||||||| || || | Sbjct 5517 TTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAAA 5458 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 |||||||| ||||||||| | | ||| | | |||| | | ||| | | |||| Sbjct 5457 TCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAGTGCCACTAAT 5398 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||| ||||| | ||||||| |||||||| || | | Sbjct 5397 AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGTTCATACCAATTAAA 5338 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | || || | || |||| ||||| || | |||||| ||||||| || || || Sbjct 5337 TTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTATAATA 5278 Query 11579 GACGTTATA-ACTTCCTTAGATGGTGGATGT--AATAA-ATGTTTAAACATTAAACACGC 11634 | || || | || || | ||| || || | || ||| | || | | ||| || Sbjct 5277 GC--TTCTACAGTT--TTTGTTGGAGGTCGTGCACGAAGATGAGTGAATAAGAGACATGC 5222 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||||||||| || ||||| |||| | |||||||| || ||||| |||||||| || Sbjct 5221 AAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCTGG 5162 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||||| ||||| ||| |||| |||||| || | || || | ||||||||||||||||| Sbjct 5161 CATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATTCC 5102 Query 11755 CTCCACAGCTGCAAATGCTAC 11775 || ||||| ||||| ||||| Sbjct 5101 TTCAACAGCGGCAAACGCTAC 5081 Score = 129 bits (142), Expect = 5e-25 Identities = 189/264 (72%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||||||||| |||||||| || || ||||||||||| ||||||| ||| ||| Sbjct 4853 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4794 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | | || || || | ||| | |||| ||||||| ||||| ||||||||||| Sbjct 4793 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4734 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA-TTTA-- 12097 | ||||| || || | | || |||||| ||||||| || | ||||| |||| Sbjct 4733 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTC-ATCGTTAAGTTTATA 4675 Query 12098 -TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156 |||||||||| | ||| || || | || ||||| ||||| |||||||| || | Sbjct 4674 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 4615 Query 12157 TGATTGTTTATACATTTTCCAGAT 12180 | | ||| ||||||| |||||| Sbjct 4614 GGCCTTTTTGTACATTTGCCAGAT 4591 >seq452 Length=54095 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 || ||||| || ||| | | || ||| || || |||||||| || ||| || || || Sbjct 32564 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 32505 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 ||||| || || ||| |||||| | || |||| || |||| ||||||| ||||| Sbjct 32504 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 32445 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 || | |||| |||||| || ||||| || | ||| || | ||| | ||| |||||| Sbjct 32444 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 32385 Query 38542 GGTCTTTC 38549 |||||||| Sbjct 32384 GGTCTTTC 32377 Score = 93.3 bits (102), Expect = 4e-14 Identities = 197/290 (68%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 37546 GGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATT 37605 ||||||||| |||| ||| | | | |||| || ||||||||||| ||| || Sbjct 33692 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 33633 Query 37606 ATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAA-CTTGTCGAACATAAA 37664 | |||||||| ||| || | | | ||| | |||| | | || ||| ||| ||| Sbjct 33632 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATT-TCATGAAGCTTCAAGAAATCAAA 33574 Query 37665 ----TACGTTAT--TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGC 37718 | || | | |||||||||||||| || ||||| || ||| |||||| || || Sbjct 33573 AGTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGC 33514 Query 37719 AACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 |||||||| | || ||| | ||| || ||||| | |||| || | || || Sbjct 33513 TACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGT 33454 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTA 37828 || | ||| ||||||| ||||||| ||||||||||||| || ||| || Sbjct 33453 ACCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATCTATAAATATTA 33404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 218/327 (67%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 || || ||||| || ||| |||||| | |||| ||| |||||||| || ||||||||| Sbjct 34268 ACTACTTGAAATTC-CCACTTAATACACGTCTTTGATAAATATTGCTTGTGTATGGTTCA 34210 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 | | | ||||| || | | || ||| ||||||||||| ||||| ||||| || | Sbjct 34209 AAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAAC 34150 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 | ||||| | ||||| | | | || | | ||| | || ||| |||||| | Sbjct 34149 AAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGA 34090 Query 37315 TCTGTTGG--GTTCT----TTAACCACATATCATATTGTAGAATACCTTTACT-CGCTGG 37367 |||| || || || || ||||| || || || || ||||||||||| | || Sbjct 34089 TCTGAAGGTTGTACTCCTGTTCCCCACAATTCGTAATGAAGGATACCTTTACTAATCGGG 34030 Query 37368 AGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAG 37427 ||| | | |||||| ||||| || | | ||| | ||| || ||||| || Sbjct 34029 GGAACCCTCATATGTAGGGTAAGGACCATCTTTAGCAGCAATTTCACATGATGATTCAAG 33970 Query 37428 TGCGGCATAATATATTGTTTCGAAAAT 37454 | |||| ||||| ||||| ||||| Sbjct 33969 AGATGCATGATATAAAGTTTCAAAAAT 33943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468464758546880