Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1195 131 2e-25 seq100 118 1e-21 seq1502 104 2e-17 seq1291 91.5 1e-13 seq2455 84.2 2e-11 >seq1195 Length=66079 Score = 131 bits (144), Expect = 2e-25 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTT 139613 |||| |||| || ||||||||||||||||||||||| | | | | ||| ||||| Sbjct 11451 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATC--TGAAAGGGTACGACCGTCTT 11394 Query 139614 CGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 139673 | || ||||| ||||| | || ||||||||||| || || || || ||||||||||| Sbjct 11393 CAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTC-T 11335 Query 139674 TGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||| |||||| |||| | || || | ||||||| | || || |||| ||| | ||| Sbjct 11334 TGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTC 11275 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| | ||||| ||||| |||||||| Sbjct 11274 TTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 11243 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || | ||||| || || |||||||| ||||||||||| Sbjct 12156 TGACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCC 12097 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | ||||| | || |||||||| | |||| |||||||||||| ||| Sbjct 12096 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGA 12037 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || ||||| || ||| |||| ||||| | ||| || | || || | | || Sbjct 12036 GGGATACCCTCTTTATC-TTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTC 11978 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| ||| | |||||| || || | |||||||| || ||||||||| Sbjct 11977 GACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCATA 11926 Score = 100 bits (110), Expect = 3e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| | |||| || || ||||||||||| || || ||| Sbjct 11697 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 11638 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || ||||||||||| | || ||||||||||| || || || Sbjct 11637 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 11579 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| |||| | ||||| || || | || || | || ||| | Sbjct 11578 GATACCCTCCTTATC-TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTA 11520 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || | ||| | || |||||||| | || |||||||| ||||||||| || Sbjct 11519 CGTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCATACCT 11467 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || || |||| || |||||||||||||| || || || Sbjct 11925 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 11866 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || |||||||| || | || |||||||||||||| || || Sbjct 11865 AGGGTTCGTCCA-TCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 11807 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | |||| ||||| || || | || |||| | ||| | Sbjct 11806 AATACCTTCTTTGTC-TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAA 11748 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || || | ||||| || || ||||||||| Sbjct 11747 CTTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCATA 11698 >seq100 Length=143921 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||||||||| || | Sbjct 59120 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 59179 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | ||||||||||| |||||| ||||| ||||| || || Sbjct 59180 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 59239 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | |||| |||| | || || | || || | || ||| || Sbjct 59240 ATACCTTCTTTATC-TTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 59298 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || || ||||||| |||||| ||||| ||||||||| Sbjct 59299 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 59347 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| ||||||||||| |||||||| | || | ||||| | ||||||||| Sbjct 58466 GTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTGTTTACCA 58525 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| ||||||||||| ||||| || ||||| || || ||| | |||| ||| Sbjct 58526 GCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATC-TTGAATCTTTGCTTT 58584 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || || | || || | || ||| || |||| ||| | || || ||||| | || Sbjct 58585 AACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGT 58644 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 58645 CTTGACGAAAATTTGCATA 58663 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||| |||||||| | Sbjct 59348 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 59407 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| | ||||||||||| |||| | ||||| ||||| ||||| Sbjct 59408 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 59467 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| |||| | || || | || || ||| ||| || Sbjct 59468 ATTCCTTCCTTATC-TTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGAC 59526 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | || || || || | || || ||||||||||||||| Sbjct 59527 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 59575 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || || ||||||||||| |||||||| | Sbjct 58892 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 58951 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| |||||| ||||| ||||| ||||| Sbjct 58952 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 59011 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | ||||| || || | || || | || ||| || Sbjct 59012 ATACCTTCTTTATC-TTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGAC 59070 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || || ||||| | || || ||||| ||||||||| Sbjct 59071 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 59119 >seq1502 Length=20690 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || ||||| ||||| || || ||||| | Sbjct 12997 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 12938 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||| ||| |||||| ||||||||||| || || Sbjct 12937 AAGGTACGTCCA-TCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 12879 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | |||| | || || | || || | || ||| | Sbjct 12878 AATGCCTTCTTTGTC-TTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTA 12820 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| || | || || ||||| | || || ||||| ||||||||| Sbjct 12819 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 12770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||||| || ||||||||||| || ||||| ||| | Sbjct 12769 CCACCTCTAAGACGGAGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGAC 12710 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| |||||||||||||| |||||| ||||||||||| ||||| Sbjct 12709 AAAGTACGTCCA-TCTTCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 12651 Query 139657 TATGCCT 139663 || ||| Sbjct 12650 AATACCT 12644 >seq1291 Length=36373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||||||| | || ||||| | || || ||||||||||| || |||||| Sbjct 19775 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 19834 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || | || | ||||| | ||||||||||||| | || | |||||| ||||| || | Sbjct 19835 AAGTGAACGTCCA-TCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 19893 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || |||||||| || ||||||| ||| | | || | || ||| | || | Sbjct 19894 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 19953 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || || || || | ||||| || || |||||||| Sbjct 19954 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 20002 >seq2455 Length=10122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || |||||||||||| |||||| ||||||||||| ||||| |||||||||| Sbjct 7131 TCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGAGTGCCTTCTTTA 7072 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| | | ||| | | || ||||| || | || || || |||| || | Sbjct 7071 TCTTGAATTATGTTTTTCACTTCTTTAACTGTATCAGAGGCATCAACTTCAATGGCAATT 7012 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| | | ||||| || || ||||| ||| Sbjct 7011 GTTTTGCCACTTACAGTTTTAACAAAAATTTGTATA 6976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496000429398400