Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1373 347 2e-90 seq178 199 6e-46 seq452 111 2e-19 >seq1373 Length=28076 Score = 347 bits (384), Expect = 2e-90 Identities = 673/988 (68%), Gaps = 14/988 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || ||||||||||| ||| |||||| ||| | ||| |||| | Sbjct 3530 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGA----TCAAATA 3475 Query 79920 CCACTCTCCATCATCCTTT------ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 |||| | || ||| ||| || | ||||||||| ||||| | || |||||| || Sbjct 3474 A-ACTC-CAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGC 3417 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 ||||| ||| | | | | || || ||||| ||||| ||||| | ||| | || Sbjct 3416 ATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAA 3357 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | ||| |||| |||||||| ||| || || || || | | ||||| |||||||| Sbjct 3356 ATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTT 3297 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | |||||||| || ||||||||||| | ||||| |||||||| || Sbjct 3296 TCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCC 3237 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || |||||| || || | ||||| ||| | |||||||| ||| ||| Sbjct 3236 ATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTT 3177 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 3176 CACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGAT 3117 Query 80274 GCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 3116 TCCCTCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAG 3058 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 || || |||||||| || || ||||| ||||| ||||| | ||||| |||| |||| Sbjct 3057 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 2998 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 |||| || |||||||| | ||| ||||| | ||||| || ||||| || ||||| | Sbjct 2997 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 2938 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||| || || || | || | | || | |||| || | |||||| |||| | Sbjct 2937 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 2878 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572 ||||||||| |||||||| || ||| | | |||| || ||||| || || || | Sbjct 2877 GAGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAA 2818 Query 80573 GTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTT 80632 |||| ||| || || | || | || || | ||||| || | | ||| Sbjct 2817 GTTTTTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 2758 Query 80633 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692 |||| |||| ||||| | ||| || | | ||| || | || | ||| | ||||| Sbjct 2757 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 2698 Query 80693 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752 | ||||| || || ||||| || || || || | || || | | |||||| || |||| Sbjct 2697 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 2638 Query 80753 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 80812 ||| || || | || || |||| || |||| | | || ||||| || || | | Sbjct 2637 GTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAA 2578 Query 80813 CTCCATTATATATTCCTTGGATAACCTT 80840 | || | ||| | |||| || ||||| Sbjct 2577 CACCTTGATAAACTCCTGAAATGACCTT 2550 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 ||||||||| ||| || | | |||| ||||| || || || |||| | || | Sbjct 3861 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 3802 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| | || || || || | |||||||| || || || || | ||||||||||||| Sbjct 3801 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 3742 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 || ||||| | ||| || || || || | || ||||| ||||| ||||| ||| Sbjct 3741 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 3682 Query 79780 TCTATAATCGCTTTCCAGAC 79799 || | ||| ||| ||||||| Sbjct 3681 TCAAGAATTGCTGTCCAGAC 3662 >seq178 Length=73968 Score = 199 bits (220), Expect = 6e-46 Identities = 325/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||||||||| |||||| || || || |||||||| || ||||| ||||| |||| Sbjct 5530 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5471 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAtttttttAAATC 49774 || || ||||| |||||||| ||||| |||||| |||||| | | Sbjct 5470 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 5413 Query 49775 CCAATT--CAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 49831 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 5412 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 5354 Query 49832 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 49891 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 5353 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 5295 Query 49892 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA-ATGTTTA 49950 |||| || | |||||||| | || |||| | ||| | |||| || ||| | Sbjct 5294 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 5236 Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 || | | |||||| ||||| || |||| || || |||| | |||||||||||||||| Sbjct 5235 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 5176 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | ||| ||||| | || | || || | |||||| || ||||| || | ||| Sbjct 5175 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 5116 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| |||||||| || |||||||| || ||||| Sbjct 5115 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 5078 Score = 178 bits (196), Expect = 2e-39 Identities = 228/310 (74%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || || | ||||| ||| ||||| || |||||||| ||||| || ||||| || Sbjct 4883 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4824 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 ||||||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4823 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4764 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4763 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4704 Query 50401 AAATGTTTTTCGTTGGGTGTT-AGTTTA---TTCCAATCATTGATATCTTTAGATATATC 50456 || |||||| || ||| |||||| | ||||||||| ||||| || || | || Sbjct 4703 AAGAATTTTTC-TTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4645 Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT-CAT 50515 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| | || Sbjct 4644 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4585 Query 50516 GATATTGGAT 50525 ||||| ||| Sbjct 4584 AATATTTGAT 4575 >seq452 Length=54095 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 32564 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 32505 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 ||||| || || ||| || || ||||| |||| || |||| || ||| || || ||| Sbjct 32504 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 32445 Query 80404 ATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGA 80463 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 32444 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 32385 Query 80464 GGTCTTTCAAC 80474 ||||||||||| Sbjct 32384 GGTCTTTCAAC 32374 Score = 86.0 bits (94), Expect = 9e-12 Identities = 135/191 (71%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 79057 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATATGGT 79113 |||||||||||||| ||| ||||| ||| || |||||||| || || |||||| Sbjct 34268 ACTACTTGAAATTC-CCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 34213 Query 79114 TCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACC 79173 || | ||||||| ||||| | ||| ||| || ||||| || ||||| ||||| | | Sbjct 34212 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 34153 Query 79174 AATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAA 79233 || ||| ||||| | || ||| ||||| || ||||| | | |||| ||||| Sbjct 34152 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 34093 Query 79234 AGATCAGACGG 79244 |||| || || Sbjct 34092 CGATCTGAAGG 34082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718176753853280