Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq178 264 1e-65 >seq178 Length=73968 Score = 264 bits (292), Expect = 1e-65 Identities = 380/530 (72%), Gaps = 12/530 (2%) Strand=Plus/Minus Query 13346 CTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAG 13405 || ||||| ||||| || ||||||||| || || | ||||||||| || || | Sbjct 5540 CTCTGTTACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTG 5481 Query 13406 TTTTACCTTCCAGTGATATATTT---TCCATAAAATCGAATGGATTTGTTGACATAAACA 13462 ||||||||| || | || || ||||||||||| || ||||| ||| || ||| Sbjct 5480 TTTTACCTT---GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA 5424 Query 13463 CTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACA 13522 ||| | | ||| ||| | | ||||||||||||||| | ||| |||||||||| || Sbjct 5423 ATTTTGCTCCACCAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCA 5364 Query 13523 TTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTT 13582 |||||| |||||||| |||| || || || | | | ||||||||||||| || Sbjct 5363 TTAAATTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTT 5304 Query 13583 CTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT- 13641 |||| | || || || ||||||| ||| || || || | ||||| | Sbjct 5303 CTATTGTAACCGCTTCCGCTATAATAG-CTTC-TACAGTTTTT-GTTGGAGGTCGTGCAC 5247 Query 13642 --AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAA 13699 ||||| | || | | ||| |||||||||||||| | || ||||||| | ||| | Sbjct 5246 GAAGATGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTA 5187 Query 13700 GTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAG 13759 ||||||| ||||| |||||||||||||||| ||||| ||| ||||||||||| |||| | Sbjct 5186 GTTCGTTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACG 5127 Query 13760 CGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAA 13819 |||| | ||| |||||||||||||| ||||| || |||||||||| || ||||| ||| Sbjct 5126 CGAAAGCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAA 5067 Query 13820 ACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttttttt 13869 | || | || || | || |||||| |||||| || | ||||||| Sbjct 5066 ATGAAGATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 5017 Score = 143 bits (158), Expect = 3e-29 Identities = 192/264 (73%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14013 |||||||| || || || ||||| || |||||||| |||||||||||||| |||||| Sbjct 4853 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4794 Query 14014 GACCATTGTACCTCCG-AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACT 14072 | ||| || || | ||||| | ||| | || |||||||| ||||||||||| Sbjct 4793 GGAATTTGGACTTCATTACTAAAA-CGTTCCACTAAATTTTCATTGACAATACCATCCGA 4735 Query 14073 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT--- 14129 || ||||| || ||||| | || ||||||| ||| ||||||| ||| ||||| Sbjct 4734 GGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATA 4675 Query 14130 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14189 | |||||| | |||||| ||||| || ||||| ||||| |||||||| ||| | Sbjct 4674 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 4615 Query 14190 AGCTTTTTTATACATTACCCATAT 14213 || ||||| |||||| ||| || Sbjct 4614 GGCCTTTTTGTACATTTGCCAGAT 4591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478527468845280