Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1373 356 3e-93 seq178 181 1e-40 seq452 102 1e-16 >seq1373 Length=28076 Score = 356 bits (394), Expect = 3e-93 Identities = 676/988 (68%), Gaps = 14/988 (1%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || || |||||| ||| ||| |||||| |||| |||| || ||| | Sbjct 3530 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGAT-CA--AATAA 3474 Query 72003 CCACTCTCCATCATCATTT------ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 |||| | || ||||||| || | ||||||||| ||||| | || |||||| || Sbjct 3473 --ACTC-CAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGC 3417 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 ||||| ||| | | | | || || ||||| ||||| ||||| | ||| | || Sbjct 3416 ATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAA 3357 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | ||| |||| |||||||| ||| || || || || | | ||||| |||||||| Sbjct 3356 ATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTT 3297 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | |||||||| || ||||||||||| | ||||| |||||||| || Sbjct 3296 TCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCC 3237 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || |||||| || || | ||||| ||| | |||||||| || ||| Sbjct 3236 ATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTT 3177 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 3176 CACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGAT 3117 Query 72357 GCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 3116 TCCCTCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAG 3058 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 || || |||||||| || || ||||| ||||| ||||| | ||||| |||| |||| Sbjct 3057 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 2998 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||| || |||||||| | ||| ||||| | || || || ||||| || ||||| | Sbjct 2997 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 2938 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||||| || || | || | | || | |||| || | || ||| |||| | Sbjct 2937 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 2878 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655 ||||||||| |||||||| || ||| | | |||| || ||||| || ||||| | Sbjct 2877 GAGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAA 2818 Query 72656 GTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTT 72715 |||| ||| || || | || |||| || | ||||| || | | ||| Sbjct 2817 GTTTTTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 2758 Query 72716 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 72775 |||| |||| ||||| | ||| || | | ||| || | || | ||| | ||||| Sbjct 2757 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 2698 Query 72776 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGAT 72835 | ||||| || || ||||| || || || || | || || || | |||||| || |||| Sbjct 2697 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 2638 Query 72836 GTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 72895 ||| || || | || || ||||||| |||| | | || ||||| || || | | Sbjct 2637 GTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAA 2578 Query 72896 CTCCATTATATATTCCTTGGATAACCTT 72923 | || | ||| | |||| || ||||| Sbjct 2577 CACCTTGATAAACTCCTGAAATGACCTT 2550 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| | ||| || | | |||| ||||| || || || |||| | | | Sbjct 3861 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 3802 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| | ||| || || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 3801 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 3742 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 || ||||| | ||| || || || ||| | || ||||| ||||| ||||| ||| Sbjct 3741 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 3682 Query 71863 TCTATAATCGCTTTCCAGAC 71882 || | ||| ||| ||||||| Sbjct 3681 TCAAGAATTGCTGTCCAGAC 3662 >seq178 Length=73968 Score = 181 bits (200), Expect = 1e-40 Identities = 321/458 (70%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||||||||| |||||| || || || |||||||| || ||||| || || |||| Sbjct 5530 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5471 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAtttttttAAATC 41879 || || ||||| |||||||| ||||| |||||| |||||| | | Sbjct 5470 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 5413 Query 41880 CCAATT--CAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCAT-TTCAC 41936 |||| | || ||| |||||||| || | ||||| |||||| ||||||| | ||| | Sbjct 5412 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 5354 Query 41937 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 41996 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 5353 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 5295 Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTA 42055 |||| || | |||||||| | ||| |||| | ||| | | || || ||| | Sbjct 5294 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 5236 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 || | | |||||| ||||| || |||| || ||||||| | ||||| |||||||||| Sbjct 5235 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 5176 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | ||| ||||| | || | || || | |||||| || ||||| || | |||| Sbjct 5175 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 5116 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213 |||||||| |||||||| || || ||||| || | ||| Sbjct 5115 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 5078 Score = 174 bits (192), Expect = 2e-38 Identities = 217/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || || | ||| | ||| ||||| || |||||||||||||| || ||||| || Sbjct 4883 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4824 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 ||||||||||| || |||||||| || || | || || ||||| ||| ||| ||||| Sbjct 4823 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4764 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 |||||||||| || || || || || ||| ||||| || ||||| || || ||| Sbjct 4763 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4704 Query 42506 AAATATTTTTCGTCCGGTGTTAA-TTTA---TTCCAATCATTGATATCTTTAGATATATC 42561 || ||||||| | | ||||| |||| | ||||||||| ||||| || || | || Sbjct 4703 AAGAATTTTTC-TTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4645 Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 ||||| || || ||||||||||| ||||| |||||||| ||||| | |||||| Sbjct 4644 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4591 >seq452 Length=54095 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 72367 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 72426 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 32564 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 32505 Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486 ||||| || || ||| || || ||||| |||| || |||| || ||| || || ||| Sbjct 32504 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 32445 Query 72487 ATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGA 72546 ||||||| || ||||| | ||| ||||| | | |||||||| ||||| || || Sbjct 32444 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 32385 Query 72547 GGTCTTTCAAC 72557 ||||||||||| Sbjct 32384 GGTCTTTCAAC 32374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671053193511520