Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1291 105 6e-18 seq1195 91.5 1e-13 >seq1291 Length=36373 Score = 105 bits (116), Expect = 6e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | | ||||| |||| ||| ||||||||||| || ||||||||| Sbjct 19776 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGG-- 19833 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | |||||| || ||||| || ||| | || | | |||||||| || Sbjct 19834 AAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 19893 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || |||||||| ||| || | | | | ||||| | ||| Sbjct 19894 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 19953 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 ||| | ||||||||||| || || | ||||| |||||||||||||| |||||| Sbjct 19954 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAA 20009 >seq1195 Length=66079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| ||||| || |||||||| || ||||| || | ||| ||| || Sbjct 11908 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 11849 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | |||||| || || |||| || | || ||||| ||| | ||||||||||| Sbjct 11848 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 11789 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| ||| ||| || || | | | |||| || || ||||| ||||||||||| Sbjct 11788 AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 11729 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||| |||||||||||||| Sbjct 11728 TCCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || || || |||||||| ||||| ||||| | || | ||||| | ||| Sbjct 11446 ATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTG 11387 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 |||||| || ||||||| | || || || ||| | ||||||||||| |||||| Sbjct 11386 TTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTT 11327 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 | ||| || ||| ||| || ||| || ||| ||| | ||| || || || ||||| Sbjct 11326 TGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGT 11267 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | ||||| || || |||||||| Sbjct 11266 AAGGGTTTTAACGAAGATTTGCAT 11243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419534774152812