Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq178 221 1e-52 >seq178 Length=73968 Score = 221 bits (244), Expect = 1e-52 Identities = 317/441 (72%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || || | ||||||||| || |||||||| |||| ||| ||| Sbjct 5518 TTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAA 5459 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||||||||| |||||||| | ||| ||| ||||| | || | | | | ||| Sbjct 5458 ATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAGTGCCACTAA 5399 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||||| ||||| ||||| || || || | ||||||||||| |||||| || ||||| Sbjct 5398 TAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGTTCATACCAATTAA 5339 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTT-CGATAACTA 13097 || || || | |||||||||||||| | || |||||| ||| |||| || || || Sbjct 5338 ATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTA--TA 5281 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGATTTG---ATAGATGCTTAAACATCATACATG 13154 | ||| ||| | | | |||||| || ||||| | || | | ||||| Sbjct 5280 -ATAGCTT-CTACAGTTTTTGTTGGAGGTCGTGCACGAAGATGAGTGAATAAGAGACATG 5223 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||||||||| |||||||||||||||| | ||||| ||||| ||||| |||| || | Sbjct 5222 CAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCTG 5163 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| | |||| ||| || | |||||| || | || || | || ||||| ||||||| Sbjct 5162 GCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATTC 5103 Query 13275 CTTCAACTGCTGCAAACGCTA 13295 ||||||| || |||||||||| Sbjct 5102 CTTCAACAGCGGCAAACGCTA 5082 Score = 114 bits (126), Expect = 1e-20 Identities = 196/280 (70%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||||| ||| ||||| | | |||||||||||||| |||||||| ||| || || Sbjct 4877 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 4818 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAA 13539 || |||||||||||||| || |||| | || ||||| | ||||| | ||| |||| Sbjct 4817 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAA-CGTTCCACTAA 4759 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 ||||| || || || || || || ||||| || || | | ||| |||||| Sbjct 4758 ATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAA 4699 Query 13600 tttttCGTTTTCTGACAACTTTA----ACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 |||||| | || | || |||| |||||| | ||| || || | || || | Sbjct 4698 TTTTTCTTCATC-GTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTT 4640 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 ||||||| |||||||| ||||| | ||||| || ||||| Sbjct 4639 CCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACAT 4600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430928550365304