Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq49 147 3e-30 seq217 102 1e-16 seq93 86.0 7e-12 >seq49 Length=212187 Score = 147 bits (162), Expect = 3e-30 Identities = 249/354 (70%), Gaps = 10/354 (3%) Strand=Plus/Plus Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 || ||| ||||||||||||| | | | || ||||||||||||||| | ||||||||| Sbjct 169760 TACCAGCTGGATTCCAAGCACTGAGAATGATTCGTCTATCATTTGGAGTA-TTTTTAATT 169818 Query 7115 TTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 | | || | ||| | |||||| | ||| | ||| |||| |||| |||| Sbjct 169819 ATATCGATGACCTCTTGCAGTTGATCAACACCTTTACCAGTGTAATCCGTATCGCAATCA 169878 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 || || | ||| ||||||||||||||||| || ||||||| |||||| |||||||||||| Sbjct 169879 ATGTACTCAGCACCAAAATGTCTCCATTGGAATCCATAAACAGGACCCAAATCACCTTCT 169938 Query 7234 TCACGATGATTAAATCCTAA-TCGATTTAAATTAGATT---TTGATCCATAAGCATCCCA 7289 | | ||| | | | || || | || |||| ||| || |||| | | ||||| Sbjct 169939 TTTCTATG-TGATAGCCCAATTTTATCCAAAT---ATTCACGAGAACCATTACCGTCCCA 169994 Query 7290 AATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAA 7349 |||||| | | ||||| | ||||| | ||||||| ||||||| |||||||| Sbjct 169995 AATATGAATACCTTTTTCGGTTAAATGTTTGCTATTTGTATTACCTTTAATAAACCATAA 170054 Query 7350 AAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 | |||||||| || ||||| ||| | | || || || |||||||| || Sbjct 170055 TAATTCTTCTATAATAGCACGCGTAAAAACGCGCTTAGTTGTTAATAAAGGTAA 170108 Score = 118 bits (130), Expect = 1e-21 Identities = 241/349 (69%), Gaps = 13/349 (4%) Strand=Plus/Plus Query 6700 GGATGAGGATTATAATC--TAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTAT 6757 |||||||| | |||| | ||| ||| |||||| ||| ||||||||||| | ||||| Sbjct 169328 GGATGAGGTTCATAACCAGTAATAAT--AAAATCATCATATTTAAAATCATCAATATTAT 169385 Query 6758 CAGACtttttttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTT--AATTGTTC 6815 | | ||| | ||| || ||| | || | ||| | | || ||| | ||| Sbjct 169386 TA-ATTTTGCGTCTAAATTTCAAACGAGGAAATGCTTT-TGGTTCACGTTCGATTTGAGT 169443 Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 ||||| ||| || |||||||| ||| ||||||| ||| || | |||||||||||||| Sbjct 169444 TTTTAAAGCATTAATATGATCATTATATATATGAGTATCACCCATGGTATGAATAAATTC 169503 Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 ||| || | | | | |||||||| | || ||||||| ||||| || | Sbjct 169504 ACCAGGACTACAACCCGTTACATGAGCAATCATATGAGTTAATATAGCATAGCTTGCAAT 169563 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT 6995 ||||| |||||||| | ||| | ||| ||||||||||||| |||| ||||| | Sbjct 169564 GTTAAATGGTACACCAAGTCCAACATCACATGATCTTTGATAAAGAAGACACGATAATCT 169623 Query 6996 ATT-GTCT---ATAGCATAAAATTGACACAATACATGACATGGAGGTAA 7040 || || | ||| |||| ||||| || || | ||||||||| ||||| Sbjct 169624 TTTCGTATTTGATA-CATAGAATTGGCAAAACATATGACATGGTGGTAA 169671 >seq217 Length=80657 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| ||| |||||| | |||||||||||||||||||||||||| || || Sbjct 38931 CAAAAAGGAACAATTGGTATTACATATCGTCAAGAAGATATGCCTTTTACAGCCGAAGGG 38872 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 || | ||||| ||| | ||||| || |||||| |||||||||| |||||| || Sbjct 38871 ATTGCACCGGACCTTGTCATTAATCCTCATGCTATTCCAAGTCGTATGACGATT 38818 >seq93 Length=91828 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||| || ||||| || ||||| || || | | || ||| ||||| ||| ||| || Sbjct 8633 AATTCCAGAAATTGGAGATAAATTCGCGAGTCGTCATGGTCAGAAAGGAACAATTGGAAT 8574 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 | ||||| ||||||||||||||| ||| || ||||||| || || ||||||| Sbjct 8573 CACTTATCATCAAGAAGATATGCCATTTGCTGCTAATGGTATTACACCTGACATTATTAT 8514 Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| ||| |||| ||||| ||||| Sbjct 8513 AAATCCACACGCTATTCCTAGTCGTATGAC 8484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595795639003200