Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq100 107 2e-18 seq1195 102 7e-17 seq1502 95.1 1e-14 >seq100 Length=143921 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||| ||||| | Sbjct 59336 AAAATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATA 59395 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || ||| ||| |||| ||||| || | |||||||| | ||| Sbjct 59396 TTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGT 59455 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||| ||||| || || | ||| ||||| || || | | ||| ||| Sbjct 59456 TGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATAGTATCA 59515 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| || |||||||| |||||||| || || || || || ||||| Sbjct 59516 TTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 59574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 ||||||||| ||||| | |||||||| | ||| | ||| |||| ||||| || Sbjct 58465 AGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTGTTTACC 58524 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 | ||||| || | |||||||||||||||||||||||| || || | ||| ||||| || Sbjct 58525 AGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTT 58584 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || | | | || |||| | || || |||| || || ||||| || || || || Sbjct 58585 AACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGT 58644 Query 94990 TTTCACAAAGATCTGCAT 95007 || || || || ||||| Sbjct 58645 CTTGACGAAAATTTGCAT 58662 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||| ||||| | | Sbjct 59108 AAAATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATG 59167 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||||| || | | | ||| || ||| || | ||||| || | ||||| || | || Sbjct 59168 TTATAGTC--TGACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTT 59225 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | |||||||| || ||||||||||| || | ||| ||||| || || | | | || | Sbjct 59226 GTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTAT 59285 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || |||| ||||| ||||| || || || ||||| || || || |||| Sbjct 59286 CAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCA 59345 Query 95007 T 95007 | Sbjct 59346 T 59346 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||||||||| | Sbjct 58652 AAAATTTGCATACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATA 58711 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| || | ||| | ||| |||| ||||| ||| | ||||| || | ||| Sbjct 58712 TTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGT 58771 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || |||||||| || || | ||| ||||| || || | | || ||| Sbjct 58772 TGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCA 58831 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| |||| || || ||||| || || ||||| || || || || ||||| Sbjct 58832 GAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 58890 >seq1195 Length=66079 Score = 102 bits (112), Expect = 7e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTT 94867 ||| || || ||||| | ||||||||| | | || || || || || || ||||| Sbjct 11440 AGTTGACTCTTTTTGAATGTTATAATC--TGAAAGGGTACGACCGTCTTCAAGTTGTTTG 11383 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | || || | | |||||| ||||| ||||| ||||||||||| | ||||||||| Sbjct 11382 CCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCT 11323 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | | |||||| | || || |||| ||||| || ||||| ||||| Sbjct 11322 TTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGG 11263 Query 94988 GTTTTCACAAAGATCTGCATGCTT 95011 ||||| || ||||| |||||| || Sbjct 11262 GTTTTAACGAAGATTTGCATGATT 11239 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| ||| | || || | | |||||||||||| |||||||||||||| Sbjct 11854 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 11795 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| ||||| || || ||| || || | || || || | || || Sbjct 11794 GTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAAT 11735 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| |||||||| ||||| || ||||| Sbjct 11734 GGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||| ||||| ||||| | ||||||||| | || || || ||| |||| Sbjct 12130 GTGAAGAGTTGATTCTTTTTGGATGTTATAATCCG--AAAGAGTACGACCATCTTCCAAT 12073 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || || | || || || | ||||||||||||||| ||||| ||||| || | |||| Sbjct 12072 TGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATT 12013 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || | || || | | || |||| ||||| |||| || || || || ||| Sbjct 12012 TTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCA 11953 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| || ||||| Sbjct 11952 GTAAGTGTTTTTACAAAAATTTGCAT 11927 >seq1502 Length=20690 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| || || | ||| | || | ||| || |||||||| | Sbjct 13010 AAAAATCTGCATACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGAT 12951 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| || || ||| |||| ||||| ||| ||||||| || | ||| Sbjct 12950 ATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTG 12891 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| || ||||| ||||||||||| | ||| || || || || | | | || || Sbjct 12890 CTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATC 12831 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || || ||||| || |||||||| || || || || ||||| Sbjct 12830 TGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 12771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 |||||| || |||| || |||||||| ||||||||||| |||||||||||||| | ||| Sbjct 13145 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 13086 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 |||| |||||| | | || |||| || || |||| || || ||||| || Sbjct 13085 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 13026 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| |||||||| Sbjct 13025 GGTGAGGGTCTTTACAAAAATCTGCAT 12999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448233751482720