Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3 109 9e-19 >seq3 Length=222125 Score = 109 bits (120), Expect = 9e-19 Identities = 208/303 (69%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 193806 GAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGC 193865 ||||| |||||| || | | || || | ||||||||||||||| || |||| || Sbjct 140777 GAACTTTATGGTAAAGTCGTTGAAACACCTCAATCAGAAACCACACCTTTCTATCCTCGT 140836 Query 193866 TCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCA 193925 || |||||||| || || || ||||| | || ||||| | | ||||||||||| | Sbjct 140837 TCACCTTATGGAGTTGCCAAATTGTACGCATACTGGATTGTAACTAATTATCGTGAAGCC 140896 Query 193926 TATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAG 193985 || | ||| || || || | || ||||| |||||||| | | ||| Sbjct 140897 TACAATATGTTTGCTTGTAACGGCGTTTTATTTAATCATGAATCTCCTCGTCGTGGTCGT 140956 Query 193986 ACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAG 194045 ||||| ||||||||||||||| ||| | | || || | || || |||| || | ||| Sbjct 140957 ACATTCGTAACTCGTAAGATTTCACGTGCTGTAGCTGAAATTTC-CTTGG-GTAAACAAG 141014 Query 194046 ATTCTTTAT--CTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATG 194103 | | ||| | |||||||| || |||| || | |||||||| || || | |||||| Sbjct 141015 AATGTTTGTGGCTTGGTAACGTTGATGCCAAACGTGATTGGGGTCATGCCAGAGATTATA 141074 Query 194104 TTG 194106 ||| Sbjct 141075 TTG 141077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807451711801120