Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq178 251 8e-62 >seq178 Length=73968 Score = 251 bits (278), Expect = 8e-62 Identities = 354/492 (72%), Gaps = 4/492 (1%) Strand=Plus/Minus Query 21172 CATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC 21231 ||||| ||| |||||||||||| || | |||||| || |||||||| || |||| Sbjct 5530 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5471 Query 21232 CAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACC 21291 || || | |||||||||||||| ||||| || || ||| | | ||| | ||| Sbjct 5470 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACC 5411 Query 21292 CAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAA-TTCACAAT 21350 ||| | |||||||||||| ||||||||||| ||||||| |||||| ||| | | Sbjct 5410 AAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG-T 5352 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 ||||||| || || || || || | |||| ||| ||||| || |||||| | || | Sbjct 5351 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 5292 Query 21411 CTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAAT-TGTTTAAAC 21469 |||| | || ||| | || | ||| ||| | | || || || | || Sbjct 5291 CTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTGAAT 5233 Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529 | | ||||||||||||||||||||| |||||||| | | |||| ||| || ||||| Sbjct 5232 AAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAA 5173 Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAA 21589 ||||| || ||||| | |||||| || ||||||||||| |||||||| || ||||| ||| Sbjct 5172 GTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAA 5113 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 ||||| || || ||||| || ||||| || || | |||||| | ||| |||||| ||| Sbjct 5112 AAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGATTCCTTA 5053 Query 21650 TCCAATATCCAT 21661 || | |||||| Sbjct 5052 TCGGAAATCCAT 5041 Score = 116 bits (128), Expect = 4e-21 Identities = 185/264 (70%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 |||||||| ||||| |||||||| ||| ||||||||||| |||||||||||||| ||| Sbjct 4853 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4794 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | | ||| || || | ||| |||| | || |||||||| || || ||||| | Sbjct 4793 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4734 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT--- 21946 |||||||| || ||||| | | ||||| || ||| | ||| ||||| ||| Sbjct 4733 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATC-GTTAAGTTTATA 4675 Query 21947 -TTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 | |||||| | ||| || || | || ||||| ||| |||||||| ||| Sbjct 4674 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 4615 Query 22006 AGCCTTTTTATACATAATCCAGAT 22029 |||||||| ||||| |||||| Sbjct 4614 GGCCTTTTTGTACATTTGCCAGAT 4591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531832636912480