Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1195 136 3e-27 seq1113 116 3e-21 seq100 105 6e-18 seq1291 98.7 9e-16 seq291 87.8 2e-12 seq1502 84.2 2e-11 >seq1195 Length=66079 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||||||||| | ||||| | ||||| ||| | | Sbjct 11699 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 11758 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| ||||| ||| ||||||| ||||||||||| || || || ||||| Sbjct 11759 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 11818 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||| || ||||| || |||| ||| | | || || || Sbjct 11819 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 11878 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| || ||| ||||||| ||| Sbjct 11879 ATTCAAAAAGAGTCAACACTTCATTTGGTG 11908 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || ||||| | || ||| | ||||| || | | Sbjct 11243 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 11302 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || ||||| ||| ||| ||| ||||||||||| || || || || || Sbjct 11303 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 11362 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||||| ||||| ||||| | | | | | ||||||||| Sbjct 11363 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 11422 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||| || || ||||| |||| Sbjct 11423 ATTCAAAAAGAGTCAACTCTTCATCTAGT 11451 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||||||| | ||||| || |||||||| | || ||||| | Sbjct 11927 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 11986 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || || || ||| || ||| || ||||| || || ||||| ||||| Sbjct 11987 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 12046 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| || || |||||| | ||||||| | | | ||||||||| Sbjct 12047 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 12106 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||||||||| || |||| Sbjct 12107 ATCCAAAAAGAATCAACTCTTCA 12129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| ||| | || || ||| | || ||| | || || ||| || Sbjct 11471 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 11530 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| ||||| ||| || ||| || || || || || || || || || Sbjct 11531 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 11590 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || || || ||||| || |||| ||| | | ||| || || Sbjct 11591 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 11650 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 |||||||||||||| || ||||| Sbjct 11651 ATTCAAAAAGAATCCACTCTTCAT 11674 >seq1113 Length=64455 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 23997 GTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACC 24056 |||| || |||||||||||||||||| | | || || ||||||||| | || || Sbjct 45474 GTGTACGTTAAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACA 45533 Query 24057 ATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGA 24116 || || ||| | ||| ||| ||||| || |||||||| ||||| || |||||||| ||| Sbjct 45534 ATTGATCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGA 45593 Query 24117 CTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAA 24176 | |||| | || |||||||| ||||||| | | | | || ||||| || || Sbjct 45594 TTAATTTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGT 45653 Query 24177 AAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTAT 24222 || || || | |||||||| |||||||| || || || |||| Sbjct 45654 GTTGAGTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG-CTAT 45698 >seq100 Length=143921 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| ||| | |||||| | ||||||||| |||| Sbjct 59574 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 59515 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || ||||| ||| ||||||| || || ||||| || ||||| |||||| Sbjct 59514 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 59455 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | | || | || || || ||| | ||||||| | | ||||| |||||| Sbjct 59454 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAG--ATTATA 59397 Query 24169 ACATTCAAAAAGAATCTAC 24187 | |||||||||||||| || Sbjct 59396 ATATTCAAAAAGAATCAAC 59378 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | |||||| | ||||| ||| || Sbjct 58662 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 58603 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| ||||||| || || ||||| || ||||| ||||| Sbjct 58602 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 58543 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 || | |||| | || || || ||| | ||||||| | | | | | | || ||||||| Sbjct 58542 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTA-CTTTATCGGATTATAA 58484 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||||||||||| Sbjct 58483 TATTCAAAAAGAATCTAC 58466 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | ||||| | ||||||||| || Sbjct 59118 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 59059 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| |||||| || |||||||| || ||||| |||||| Sbjct 59058 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 58999 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || | |||| | || || || ||| | ||||||| | | ||| | |||||||| Sbjct 58998 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTA-CGTTGTCAGATTATAA 58940 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||||||||||| || Sbjct 58939 TATTCAAAAAGAATCAAC 58922 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || ||| | || || | ||||| ||| || Sbjct 59346 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 59287 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| ||||||| || |||||||| || || || |||||| Sbjct 59286 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 59227 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | |||| | || || || ||| | ||||||| | | ||||| | |||| Sbjct 59226 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAG--ACTATA 59169 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||||||||||||||| || Sbjct 59168 ACATTCAAAAAGAATCCAC 59150 >seq1291 Length=36373 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | ||||| |||||| | ||||| ||| | ||||| | ||||| || Sbjct 20005 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 19946 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||| |||||||| |||||||| |||| ||| || |||||||| || || || ||| Sbjct 19945 AGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGAT 19886 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTA 24166 ||||| | | || | | || || || | ||||||| || || | |||||| Sbjct 19885 CAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTC-CGATTA 19827 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || |||||||||||||| ||| | || || || Sbjct 19826 CAATATTCAAAAAGAATCAACATTACACTTGGT 19794 >seq291 Length=210698 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 23994 CAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GA 24052 || || ||||| |||||| ||||||||||| | |||| ||| | || || | | || Sbjct 180902 CAGGTATTTGTGAAAACACTAACTGGAAAAAC-ATTAACATTGGAGACGGCTTCGAGTGA 180960 Query 24053 CACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACA 24112 || || || || | ||| |||||| ||||||||||| || ||||| |||||||| Sbjct 180961 TACAATTGACAAACTTAAATGTAAGATTTATGACAAAGAAGGAATTCCTCCTGATCAACA 181020 Query 24113 GAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATAAC 24170 | || |||| | |||| |||| | ||||| | | | | |||| |||||| | Sbjct 181021 ACGCCTTATTTTTGCTGGCACGCAATTAGAAGAAGGACGTACCTTGTCA--GATTATTAT 181078 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || |||||||| | ||||||||| | || | ||| | | |||||| Sbjct 181079 ATCCAAAAAGAGTGCACAATTCATCTTGTACTTAGACTACGTGGAGGA 181126 >seq1502 Length=20690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | ||||| | ||||| ||| || Sbjct 12771 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 12830 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || ||||| ||| |||||| |||||||||||||| || || ||||| Sbjct 12831 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 12890 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | |||| | | ||| || ||| | ||||||| | | | |||| ||||| | Sbjct 12891 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCA--GATTACA 12948 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || ||||| || || || | ||| | ||| | | || ||||| || Sbjct 12949 ATATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 12997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429882281109060