Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1195 120 3e-22 seq1502 116 3e-21 seq1291 111 1e-19 seq100 98.7 9e-16 >seq1195 Length=66079 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || || |||| ||| | || ||||| ||||||||||| ||||| Sbjct 11469 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 11410 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || || ||||| ||| | || | ||| |||||||| || || Sbjct 11409 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 11350 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| ||||| | | || || | ||| |||| || || | Sbjct 11349 ATTCCTTCTTTGTC-TTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAAC 11291 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || || ||||| || ||||| ||||| || ||||||| Sbjct 11290 TTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGA 11241 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| ||||| | || ||||| |||||||| ||||| || Sbjct 11925 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 11866 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || || || || ||| | || | ||| ||||| || || || Sbjct 11865 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 11806 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| | | ||| || | || || | ||||||| ||||| | Sbjct 11805 ATACCTTCTTTGTC-TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 11747 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || ||||||||||| || ||||| ||||| Sbjct 11746 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 >seq1502 Length=20690 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| ||||| | ||| | || ||||||||||| || |||||||| | Sbjct 12997 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 12938 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | || || || || |||| || || ||||| ||||| || Sbjct 12937 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 12878 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT-GCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| || ||| |||| | || | || | ||||| | |||||| | Sbjct 12877 ATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 12819 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| ||||| || |||||||| ||||| Sbjct 12818 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 12771 >seq1291 Length=36373 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| ||||| || || || |||| || || || |||||||| ||||||||| Sbjct 19775 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 19834 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || || |||| ||| || || || | |||||||| || || ||||| || Sbjct 19835 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 19894 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||| || ||||| | |||| | || | |||||| | || | Sbjct 19895 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 19954 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||||||||| || || ||||| || ||||| |||||| Sbjct 19955 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 20003 >seq100 Length=143921 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || | ||| | || || || |||||||| || ||||| | Sbjct 58892 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 58951 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || || || ||| |||| || || || || || |||||| Sbjct 58952 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 59011 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || || ||| || | || || | ||||| | |||||||| Sbjct 59012 ATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACT 59071 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| || || || |||||||| ||||| Sbjct 59072 TCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 59118 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || | ||| | || || || ||||||||||| || || | Sbjct 59120 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 59179 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || || || ||| |||| || || || || || || ||| Sbjct 59180 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 59239 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| | | ||||| | | || || | ||||| | |||||| | Sbjct 59240 ATACCTTCTTTATC-TTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 59298 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||||||||| || ||||| |||||||| ||||| Sbjct 59299 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || || |||||||| || ||||| Sbjct 58436 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 58495 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| |||| || || ||||| || ||||| Sbjct 58496 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 58555 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT-GCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | ||||| | || | || | ||||| | |||||| | Sbjct 58556 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 58614 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||||| || || || |||||||| ||||| Sbjct 58615 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 58662 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || | ||| | || || ||||||||||| || || || Sbjct 58664 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 58723 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| |||| || || || || || || ||| Sbjct 58724 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 58783 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT-GCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | ||||| | || | || | ||||| | |||||||| Sbjct 58784 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGAC 58842 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| ||||| || |||||||| ||||| Sbjct 58843 TTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 58890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471952311559680