Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1373 349 4e-91 seq178 190 3e-43 seq452 111 2e-19 >seq1373 Length=28076 Score = 349 bits (386), Expect = 4e-91 Identities = 678/991 (68%), Gaps = 20/991 (2%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGT---CCAGGACATTCATCCGGA-CACATCA 63047 ||| || || || |||||||||| ||| | |||||| |||| ||||| || || | Sbjct 3530 TTCAAATTCATCACCCCAAACAT---CCATTAAACCAGGAGCTTCAGCCGGATCAAATAA 3474 Query 63048 ACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63106 || | | | || | | |||| | | ||||||||| ||||| | || |||||| || Sbjct 3473 ACTCCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCA 3416 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 ||||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || Sbjct 3415 TAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAA 3356 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226 | | ||| |||| |||||||| ||| || || || || | | || || ||||||||| Sbjct 3355 TCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTT 3296 Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | |||||||| || ||||||||||| | ||||| |||||||| ||| Sbjct 3295 CCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCA 3236 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || || |||||| || || | ||||| ||| | |||||||| ||| ||| Sbjct 3235 TTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTC 3176 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 3175 ACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATT 3116 Query 63407 CCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 3115 CCCTCTATTGAATCATCTTTCATAGTTAAA-AGAAAACAACTCGAAAGTTGAGGTCTAGG 3057 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || |||||||| || || ||||| ||||||||||| | ||||| || | ||||| Sbjct 3056 TGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATT 2997 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || |||||||| | || ||||| | ||||| || || || || ||||| | Sbjct 2996 GTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAG 2937 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| || || || | || | | || |||| || | || ||| |||| | Sbjct 2936 CATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAG 2877 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||||||||| |||||||| || ||| | | |||| || ||||| || || || || Sbjct 2876 AGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAG 2817 Query 63706 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATAGGAAAAT 63761 ||| ||| | ||||| | ||| || ||| || ||||| || | Sbjct 2816 TTTTTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGC 2761 Query 63762 GTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63821 ||||||| |||| ||||| | ||| || | | ||| || | || | ||| | || Sbjct 2760 GTTTCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTT 2701 Query 63822 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 63881 |||| |||||||| || ||||| || || || || | ||| || || | |||||| |||| Sbjct 2700 TTTTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCG 2641 Query 63882 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 63941 |||||| || || | || || |||| || |||| | | || ||||| || || Sbjct 2640 GATGTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGC 2581 Query 63942 TTACACCATTATATATTCCTTGGATAACCTT 63972 | ||||| | ||| | |||| || ||||| Sbjct 2580 TAACACCTTGATAAACTCCTGAAATGACCTT 2550 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 ||||||||| |||||| | | |||| ||||| || || || |||| | || | Sbjct 3861 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 3802 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 3801 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 3742 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 3741 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 3682 Query 62912 TCTATAATCGCTTTCCAGAC 62931 || | ||| ||| ||||||| Sbjct 3681 TCAAGAATTGCTGTCCAGAC 3662 >seq178 Length=73968 Score = 190 bits (210), Expect = 3e-43 Identities = 323/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 5530 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5471 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA-AAtttttttAAATC 32475 ||| || ||||| ||||| || ||||| |||||| |||||| | | Sbjct 5470 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 5413 Query 32476 CCAATT--CAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 32532 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 5412 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 5354 Query 32533 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 32592 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 5353 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 5295 Query 32593 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTA 32651 |||| || | |||||||| | ||| |||| | ||| | | || || ||| | Sbjct 5294 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 5236 Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 || | | |||||| ||||| || || | || || |||| | ||||| |||||||||| Sbjct 5235 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 5176 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | ||| ||||| | || | || || | |||||| || ||||| || | |||| Sbjct 5175 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 5116 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 32809 |||||||| |||||||| || || ||||| || | ||| Sbjct 5115 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 5078 Score = 174 bits (192), Expect = 2e-38 Identities = 217/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 4883 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4824 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || |||||||| || || ||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4823 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4764 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4763 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4704 Query 33102 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 33157 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 4703 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4645 Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 4644 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4591 >seq452 Length=54095 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 63416 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63475 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 32564 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 32505 Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63535 ||||| || || ||| || |||||||| |||| || || | || ||| || || ||| Sbjct 32504 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 32445 Query 63536 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63595 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 32444 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 32385 Query 63596 GGTCTTTCAAC 63606 ||||||||||| Sbjct 32384 GGTCTTTCAAC 32374 Score = 86.0 bits (94), Expect = 8e-12 Identities = 192/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 62600 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62659 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 33692 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 33633 Query 62660 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62718 | |||||| | ||| | | || ||||| | | || | || || | |||||||| Sbjct 33632 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 33573 Query 62719 ----TCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 62773 ||| |||| ||||| | |||| || || || | ||||||||||||| Sbjct 33572 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 33513 Query 62774 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 62833 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 33512 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 33453 Query 62834 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 62879 || | ||| | ||||||| |||| ||||| | ||| |||||| Sbjct 33452 CCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATC--TATAAA 33409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633550800059200