Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1291 122 7e-23 seq1195 113 4e-20 seq100 105 6e-18 seq1502 95.1 1e-14 >seq1291 Length=36373 Score = 122 bits (134), Expect = 7e-23 Identities = 174/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 |||||| |||||||||||||| ||||| | || || ||||||||||| | ||| || Sbjct 20009 TTTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGA 19950 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 | |||||| | | | | || ||| |||||||| || |||||||| | ||| Sbjct 19949 AAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCC 19890 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCC 111357 ||||||||| | | || | ||| || ||||| || |||||| | ||| | || Sbjct 19889 GGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CC 19832 Query 111358 GATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAAT 111417 ||||| ||||| ||||||||||| ||| |||| || || | ||| | ||||||||| | Sbjct 19831 GATTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGGCGGT 19772 Query 111418 AAA 111420 ||| Sbjct 19771 AAA 19769 >seq1195 Length=66079 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || ||||||||||| ||||| || | | Sbjct 11699 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 11758 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | || |||||| ||| ||| ||||||||||| ||||| ||||| Sbjct 11759 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 11818 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || |||| || || |||||| | || ||| ||| | | || || ||| Sbjct 11819 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 11878 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || ||||| ||||| ||| | ||||| || ||||| Sbjct 11879 ATTCAAAAAGAGTCAACACTTCATTTGGTGCTTCGTCTTCGTGGTGG 11925 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | ||||| || || || ||| | ||| ||| | | Sbjct 11243 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 11302 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| ||| || ||| ||||||| ||||||||||| ||||| || || Sbjct 11303 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 11362 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | ||||||| || ||||||||| | ||||| | || | | |||||||| Sbjct 11363 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 11422 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || || || ||| |||| | || || ||||| || Sbjct 11423 ATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 11469 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || || || |||||| | || ||| | Sbjct 11927 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 11986 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| ||||| ||| |||||| || ||||| || | || ||||| Sbjct 11987 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 12046 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || || |||||||||||| | ||| | | |||||||| Sbjct 12047 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 12106 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || || || | || | ||||| || ||||| Sbjct 12107 ATCCAAAAAGAATCAACTCTTCACCTCGTCCTCCGTCTCCGTGGTGG 12153 >seq100 Length=143921 Score = 105 bits (116), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| ||||| || | ||||| ||||| |||||| | ||| || || Sbjct 58662 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 58603 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | ||| || ||| ||| ||| || || ||||| |||| ||||| Sbjct 58602 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 58543 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||||||||||||| ||| | | ||||||||| Sbjct 58542 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAAT 58483 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATA 111418 || |||||||||||||| || ||| | || | ||||| || ||||| ||||| Sbjct 58482 ATTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGGTCAATA 58430 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || ||||| || | || || |||||||||||| | ||| || ||| Sbjct 59574 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 59515 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| || || ||| ||| ||| || || ||||| |||| |||||| Sbjct 59514 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 59455 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||||||||||||| ||| || | ||||||||| Sbjct 59454 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 59395 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || || ||| | || | ||| | | ||||| Sbjct 59394 ATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 59348 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || |||||| ||||||| ||||| || || | ||| || || Sbjct 59346 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 59287 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | ||| || ||| ||| ||| || |||||||| | ||| |||||| Sbjct 59286 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 59227 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || |||||||| |||||| | || || | || ||||| Sbjct 59226 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAAC 59167 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || || ||| | || | ||| | | ||||| Sbjct 59166 ATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 59120 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| ||||| || | ||||| ||||| ||||| | ||| || || Sbjct 59118 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 59059 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | || |||||| || ||| || |||||||| | || |||||| Sbjct 59058 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 58999 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || |||||||| |||||| | || || | ||||||||| Sbjct 58998 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAAT 58939 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || || ||| | || | ||| | | ||||| Sbjct 58938 ATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 58892 >seq1502 Length=20690 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || || || | ||||| ||||| ||||| | ||| || || Sbjct 12771 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 12830 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| ||| || ||| || ||| |||||||||||| ||||| ||||| Sbjct 12831 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 12890 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || ||||||||||||||| || || | ||||| ||| Sbjct 12891 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 12950 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || ||| | ||| | ||| | | ||||| Sbjct 12951 ATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 12997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422987142738400