Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq100 150 4e-31 seq1195 147 5e-30 seq1291 116 9e-21 seq1502 114 3e-20 seq291 104 6e-17 >seq100 Length=143921 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | ||| ||||||||| || |||||||| | | || || || ||| Sbjct 59135 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 59194 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 ||||||||||| || |||||||||| || ||||| |||| ||||| ||||||||| Sbjct 59195 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTG---ATCTGGGGGGATACCTTCTTTA 59251 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || | ||||| | ||| || |||||||| || ||||| Sbjct 59252 TCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATT 59311 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || || ||||| || ||||| Sbjct 59312 GTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | || ||||||||| |||||||| || | | ||| || || ||| Sbjct 58907 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 58966 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 ||||||||||| || |||||||||| || ||||| |||| ||||| ||||||||| Sbjct 58967 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTG---ATCTGGAGGGATACCTTCTTTA 59023 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || |||| ||| || | ||||| | ||| || || ||||| || || || Sbjct 59024 TCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATT 59083 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||||||||| || ||||| Sbjct 59084 GTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 59118 Score = 138 bits (152), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||||||||| | || ||| ||||| ||||||||||| | | || || || || Sbjct 58678 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 58737 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTT 288377 ||| |||||||| || |||||||||| || ||||| |||| ||||| ||||| || Sbjct 58738 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTG---ATCTGGGGGGATACCTTCCTT 58794 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||| || || || ||||| || | ||||| | ||| || || ||||| || || || Sbjct 58795 ATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAAT 58854 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||||||||| || ||||| Sbjct 58855 TGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 58890 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | || ||||||||| |||||||| || | | || || || ||| Sbjct 59363 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 59422 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || |||||||| || |||||||| | || ||||| |||| || |||||||| ||| Sbjct 59423 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTG---ATCTGGAGGAATTCCTTCCTTA 59479 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || | || |||| ||| | || || ||||| || || || Sbjct 59480 TCTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATG 59539 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||||||||| ||||| Sbjct 59540 GTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 59574 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | |||||||||||| | || ||||||||| |||||||| || Sbjct 58433 TGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCC 58492 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || || || ||||| |||||||| || |||||||||| || || || |||| Sbjct 58493 GATAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTG---ATCT 58549 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || ||||| ||||| || || || ||||| || | ||||| | ||| || Sbjct 58550 GGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGAC 58609 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || || ||||| || ||||||||||| || ||||| Sbjct 58610 TCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 58662 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| |||||||| || || || | || |||| ||| ||||| |||||| Sbjct 59893 CCTTCTTTATCTTGGATTTTTGCCTTGACTTGGTCAATAGTATCTGAAGATTCAACTTCG 59952 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| |||||||| ||||| || ||||| Sbjct 59953 AGAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 59996 >seq1195 Length=66079 Score = 147 bits (162), Expect = 5e-30 Identities = 177/238 (74%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| |||||| ||||||| || |||||||| || ||||| || | Sbjct 11469 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 11410 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | |||||| || ||||| || ||||| || || |||||| Sbjct 11409 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGG---TCTGGG 11353 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || ||||| ||||| || | || |||| ||| ||||| Sbjct 11352 GGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCA 11293 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTA-TGTTA 288480 ||||| || ||||| ||||| ||||| || || || ||||| || ||||| | ||||| Sbjct 11292 ACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGATTGTTA 11235 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || ||||| |||| || |||||||||||| ||||| || Sbjct 12156 TGACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCC 12097 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || ||||| ||||| || || ||||| |||| ||| || || |||| Sbjct 12096 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTG---ATCT 12040 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || |||||||| || ||||| | ||| || | || || | ||| ||| Sbjct 12039 GGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGAT 11980 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || || || || || || || || ||||| Sbjct 11979 TCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 11927 >seq1291 Length=36373 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | | |||||| | || | || ||||||||| ||||| || |||| Sbjct 19776 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 19835 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | ||||| |||||||| ||||| || || || || | ||| |||||| ||| Sbjct 19836 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 19895 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| || ||||| |||| || || || || | |||||| ||| ||| Sbjct 19896 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 19955 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || || || || || || || || ||||| Sbjct 19956 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 20002 >seq1502 Length=20690 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || ||||||||||| || || | | || ||||| ||| Sbjct 12982 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 12923 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || |||||||| || || ||||||| || || || ||| ||| || |||||||| Sbjct 12922 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTG---ATCCGGGGGAATGCCTTCTTTG 12866 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || |||||||| || | || || | ||| || |||||||| || || || Sbjct 12865 TCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATA 12806 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| ||||| || ||||| Sbjct 12805 GTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 12771 >seq291 Length=210698 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 288238 CATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTA 288297 || |||| ||| || || ||||||||||| |||||||| |||| ||||||||||||| | Sbjct 181133 CAAACAT-TCCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAA 181075 Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 || || | | || ||||| ||||||||||| | || || || || || || |||||| Sbjct 181074 TAATCTGACAAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGA 181015 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 | || ||||||||||| || | || || ||| | || || || | ||| ||| Sbjct 181014 TCAGGAGGAATTCCTTCTTTGTCATAAATCTTACATTTAAGTTTGTCAATTGTATCACTC 180955 Query 288418 GA 288419 || Sbjct 180954 GA 180953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179499447970856