Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq452 84.2 3e-11 seq177 84.2 3e-11 >seq452 Length=54095 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 114353 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 ||||||||| |||| ||| || || |||||| ||| || | ||||| || | ||| Sbjct 33656 ACGGGATAATAATTTTCATCAATGACTTTATTTAAATTCTTTATAACAACTTTAGCAATT 33597 Query 114413 TCATGAAGCTTTTCGTAATCAAAA--CTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 114470 ||||||||||| | |||||||| | ||| | | ||| ||| | ||||| | | Sbjct 33596 TCATGAAGCTTCAAGAAATCAAAAGTTTTCGATTTGGT--ATTAACAAATTTAGGTAATG 33539 Query 114471 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 114530 ||||| || | |||||| || | ||||| |||| || || | |||||| | Sbjct 33538 AAATTGAAGCTAAATTACAAACGGCTACTTCATCGGGTGCAGTATATTCAACAATTTCAG 33479 Query 114531 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 114590 |||| ||||| || | | || || || | ||||||||||| || ||| ||||| | Sbjct 33478 TACATAAATTAGAGCATGTTATAGTACCAAGATTCTTTTGATTAGATTTTTCATTACAAG 33419 Query 114591 CATC 114594 ||| Sbjct 33418 AATC 33415 >seq177 Length=77576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 172799 TTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACT 172858 |||||||| || ||||| || || || | ||||||||||| | ||||| || |||||| Sbjct 53870 TTCCCACGAAGCGGGAAAACTCCATAATTGTCACGACCAACTATAGAAAATCCGGCAACT 53811 Query 172859 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA--CTTTCCAGATTGTG 172916 || | | ||| || ||||| || || || | ||| | ||||| ||| || || | Sbjct 53810 GCCAAAGCCTTTGCAGAATCGCCTTCAGTAAGGATTAAAGTACAATCTTGACATTTTTTA 53751 Query 172917 CCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTG-CGG 172975 ||| || || || || ||||| |||| || | |||||| | ||| | || || | Sbjct 53750 CCG--CCGGCATTATTTGCATCATCCAGTTTAGCAATACCCATGATTCT--ACCTGTCTT 53695 Query 172976 GC-ACCATCTGTCTTCTTGAGTTCCTT 173001 | |||||| || ||||| |||||||| Sbjct 53694 TCTACCATCGGTTTTCTTTAGTTCCTT 53668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597277049136160