Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1195 100 3e-16 seq1291 87.8 2e-12 >seq1195 Length=66079 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || |||||||||||||| || | || || || | || || || || ||||||||||| Sbjct 11661 TCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAA 11602 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | | |||||| | | ||| |||| |||| | | Sbjct 11601 ATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTAT-CTTGAATTTTGGTTTTTACTTG 11543 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || || || || | |||||||||||||| || || |||||||| Sbjct 11542 GTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTAC 11483 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 11482 GAAGATTTGCAT 11471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | ||| ||| |||||||||||||| |||| || || || | Sbjct 11914 ACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCC 11855 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || ||||| ||||| ||||| || ||||| || | || | | || || Sbjct 11854 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 11795 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | |||| ||| | | | || ||| || || || || | || | Sbjct 11794 GT-CTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAA 11736 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || ||||| || || ||||| |||||||| Sbjct 11735 TGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| |||||||| || ||||| | || || || |||| || || || || |||||||| Sbjct 11434 CTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAA 11375 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | || | | || ||||| ||| |||||| || | | | Sbjct 11374 AATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCT-TGAATTTTTGCTTTAACTT 11316 Query 42137 CGCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | || |||||| ||||| || || | ||||| || || || || || || || | Sbjct 11315 GGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAA 11256 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 11255 CGAAGATTTGCAT 11243 >seq1291 Length=36373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 |||| || || || | |||||| | ||||| || ||||| || ||||||||||||| Sbjct 19769 TTTACCG-CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGT 19827 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 |||| | || | || | || |||| ||| |||||||| ||||| | || || || | Sbjct 19828 AATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGAT 19887 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 42153 | | || | | || || || ||||||| ||||| | | | || ||||| Sbjct 19888 CCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTAC 19947 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| || || | || |||||||| || || || || || ||||| |||||||| || Sbjct 19948 TTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTT 20005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543143187279680