Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1291 150 1e-31 seq1195 107 1e-18 seq100 102 6e-17 >seq1291 Length=36373 Score = 150 bits (166), Expect = 1e-31 Identities = 184/248 (74%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || || | | || || || | || || |||||||| || ||||||||| Sbjct 19775 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCG-- 19832 Query 15009 GAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || | | || | |||||||| ||||| ||||| |||| ||||| ||||| || Sbjct 19833 GAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGG 19892 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 || |||||||| || || |||||| ||| || | || || ||||||||| |||| Sbjct 19893 GGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCA 19952 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATA 15186 || ||||| |||||||||||||| || || ||||| |||||||||||||| ||| ||| | Sbjct 19953 ACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTT-AAAAA 20011 Query 15187 AATTTTTT 15194 ||||| || Sbjct 20012 AATTTATT 20019 >seq1195 Length=66079 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||| |||||| || || |||||||| ||||| ||||| || | | ||||||| Sbjct 11451 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCA 11392 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||||||| | || | ||| || ||||| ||||||||||| ||||| | Sbjct 11391 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 11332 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| || || ||||| ||| | ||| || || | ||| || || || Sbjct 11331 ATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTT 11272 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||||||| Sbjct 11271 CCGGTAAGGGTTTTAACGAAGATTTGCAT 11243 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || |||||||| || ||||| || || ||| | || || Sbjct 11907 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 11848 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| || ||| | || | ||| || || || ||||| ||||| ||||| | Sbjct 11847 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 11788 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||||||| || || || |||||| | || || || || ||||||||||| Sbjct 11787 ATCTTTGCTTTT-ACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 11729 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| ||||||||||||||| Sbjct 11728 TCCAGTTAGAGTTTTAACAAAAATTTGCATA 11698 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| ||||| ||||| ||| | | | ||||| ||||| Sbjct 12129 TGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGC 12070 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | |||||||| || || || || || || || || || ||||||| Sbjct 12069 TTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTG 12010 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||| || || || ||||| ||| || || | |||||| || ||||| || Sbjct 12009 GTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTA 11950 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || ||||||||||||||||||||| Sbjct 11949 AGTGTTTTTACAAAAATTTGCATA 11926 >seq100 Length=143921 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| ||||| || || || Sbjct 59120 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTC--TG 59177 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | |||||||||||||| |||||| | ||||| || ||||| || | Sbjct 59178 ACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGG 59237 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || ||||| || || ||| ||||| ||| || ||||| ||||| ||| Sbjct 59238 GGATACCTTCTTTATCTTGAATCTTTGC-TTTAACTTGGTCTATGGTATCAGAGGACTCT 59296 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | || || |||||||| ||||| ||||| || |||||||||||| Sbjct 59297 ACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 59347 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| || || ||||| || Sbjct 59348 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATC--TG 59405 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | | ||||| |||||||| |||||| | || || || ||||| || | Sbjct 59406 ACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAG 59465 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||||||||||| || ||| ||||| ||| || || |||||||| | || Sbjct 59466 GAATTCCTTCCTTATCTTGAATCTTTGC-TTTAACTTGATCAATAGTATCATTGGACTCG 59524 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | |||||||||||| || || || || || || || ||||||||| Sbjct 59525 ACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 59575 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| |||||||| || || ||||| | | | | | ||||| ||||| Sbjct 58459 ATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTG 58518 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 ||| |||||| | ||||| || || || || ||||| |||||||| || ||| || Sbjct 58519 TTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTT 58578 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 |||||| || ||||| ||||| || || || | |||||| |||||||| | Sbjct 58579 TGCTTTA-ACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGG 58637 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || |||||||||||| Sbjct 58638 TGAGGGTCTTGACGAAAATTTGCATA 58663 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| || || ||||| || Sbjct 58892 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATC--TG 58949 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | |||||||||||||| |||||| | ||||| || ||||| || | Sbjct 58950 ACAACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAG 59009 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || ||| || ||||||| ||||| ||||| || | Sbjct 59010 GGATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGA 59069 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||||| |||||||| || || || || || |||||||||||| Sbjct 59070 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 59119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357347345209820