Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1213 187 3e-42 >seq1213 Length=44858 Score = 187 bits (206), Expect = 3e-42 Identities = 327/470 (70%), Gaps = 16/470 (3%) Strand=Plus/Plus Query 154598 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 154657 || ||| ||||| |||||| ||| || |||||||| ||| | ||| | || || || || Sbjct 33476 TGTTATAACAGGATTTGATGGTATTTCTTTACAACCAAACTCTGGAGCTCAAGGAGAATA 33535 Query 154658 TGCAGGACTGTTA-GCA--ATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAA 154714 | ||||| ||| | | || |||||||||| || | || |||||||| | || Sbjct 33536 TACAGGA---TTACGTATTATTGGAGCATACCATAAATCAAAGGGTGATGATAAGCGTAA 33592 Query 154715 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGG 154774 ||| ||||| || || | ||||| ||||| || ||||| || ||||| |||||||| Sbjct 33593 TGTTTGTTTAATTCCTGTATCAGCTCATGGTACAAATCCCGCATCTGCTGCGATGGCAGG 33652 Query 154775 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGA 154834 ||| |||||||| ||| || ||||| || ||||| | | || || |||||| | || Sbjct 33653 TATGGAAGTTGTACCTGTTAAATGTGAAAATAATGGTGATCTTGATATGAAAGATTTGGA 33712 Query 154835 GAAGAAAGCAATCA----TGAATACATTTGAACTGTCATGTATTATGATTACATACCCAT 154890 | || || | || | || ||| | | | | | | ||| |||| || |||| Sbjct 33713 AGAAAAGGCTACCAAATTTAAAGACAGATTAGCAGC----TTTCATGGTTACTTATCCAT 33768 Query 154891 CTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATG 154950 | ||| |||||||||||||| || | | |||| | || ||||| | |||| Sbjct 33769 CAACATTTGGTGTATTTGAAAGCGGAGTTGTAAAAGCATGTGAAATAATTCATCAAAATG 33828 Query 154951 GTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCAT 155010 | || || || ||| | |||||||||||| |||||||||| | ||| || | |||| Sbjct 33829 GAGGACAAGTTTATATGGATGGAGCAAATTTAAATGCACAAATTGGATTATGTACACCAG 33888 Query 155011 GTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTG 155059 || | || || || ||||| |||||| | || |||||||||||||||| Sbjct 33889 CTG-GCATAGGAGCTGATGTTTGTCATTTGAATCTACATAAAACATTCTG 33937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579138573879680