Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1213 181 1e-40 >seq1213 Length=44858 Score = 181 bits (200), Expect = 1e-40 Identities = 326/470 (69%), Gaps = 16/470 (3%) Strand=Plus/Plus Query 159273 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 159332 || ||| ||||| |||||| ||| || |||||||| ||| | ||| | || || || || Sbjct 33476 TGTTATAACAGGATTTGATGGTATTTCTTTACAACCAAACTCTGGAGCTCAAGGAGAATA 33535 Query 159333 TGCAGGACTGTTA-GCA--ATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAA 159389 | ||||| ||| | | || |||||||||| || | || |||||||| | || Sbjct 33536 TACAGGA---TTACGTATTATTGGAGCATACCATAAATCAAAGGGTGATGATAAGCGTAA 33592 Query 159390 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGG 159449 ||| ||||| || || | ||||| ||||| || ||||| ||||| || | ||||||||| Sbjct 33593 TGTTTGTTTAATTCCTGTATCAGCTCATGGTACAAATCCCGCATCTGCTGCGATGGCAGG 33652 Query 159450 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGA 159509 ||| |||||||| ||| || ||||| || |||| | | || || |||||| | || Sbjct 33653 TATGGAAGTTGTACCTGTTAAATGTGAAAATAATGGTGATCTTGATATGAAAGATTTGGA 33712 Query 159510 GAAGAAAGCAATCA----TGAATACATTTGAACTGTCATGTATTATGATTACATATCCAT 159565 | || || | || | || ||| | | | | | | ||| |||| ||||||| Sbjct 33713 AGAAAAGGCTACCAAATTTAAAGACAGATTAGCAGC----TTTCATGGTTACTTATCCAT 33768 Query 159566 CTACACATGGTGTATTTGAAA-CAAACATCAGACAGATATGTAAGATTGTTCATGAGAAT 159624 | ||| |||||||||||||| | | | | || |||| | || ||||| | ||| Sbjct 33769 CAACATTTGGTGTATTTGAAAGCGGAGTTGTAAAAG-CATGTGAAATAATTCATCAAAAT 33827 Query 159625 GGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCA 159684 || || || || ||| | ||||| |||||| |||||||||| | || || | |||| Sbjct 33828 GGAGGACAAGTTTATATGGATGGAGCAAATTTAAATGCACAAATTGGATTATGTACACCA 33887 Query 159685 TGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTG 159734 || | || || ||||| |||||| | || ||||||| |||||||| Sbjct 33888 GCTGGCATAGGAGCTGATGTTTGTCATTTGAATCTACATAAAACATTCTG 33937 Score = 118 bits (130), Expect = 1e-21 Identities = 200/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 158407 GGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 158466 || || ||||| ||| ||||||||||| | || || | |||||| ||||| | || Sbjct 32453 GGAGAATGGGGTGCTGATATTGCTGTAGGCAATAGTCAGCGCTTTGGTGTTCCTTTAGGT 32512 Query 158467 TACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 158526 || || || || ||||| ||||| ||||| | |||| | |||| ||| || || Sbjct 32513 TATGGTGGCCCGCATGCCGCATTTTTTGCTTGCAAAGACCAACTTAAGCGAAGAATGCCA 32572 Query 158527 GGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTA 158586 || || | || || || ||| || |||||||| || | || | || Sbjct 32573 GGTCGATTAGTTGGGGTCTCGCGGGATGCATCTGGAAATAAAGCTTATCGTTTGTCGTTA 32632 Query 158587 CAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAA 158646 || || ||||| || ||||| ||| |||| ||||| || ||||| || || || |||||| Sbjct 32633 CAAACCAGAGAACAACATATTAGACGAGAGAAAGCTACTAGTAATATATGTACTGCACAA 32692 Query 158647 GCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGA 158696 ||||| ||||||||||| ||| | ||||| ||||||||| |||| Sbjct 32693 GCACTCTTGGCTAATATGGCTGCTATGTATGCTATATATCATGGACCAGA 32742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587975841238720