Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1195 179 8e-40 seq1291 140 7e-28 seq100 136 9e-27 seq1502 132 1e-25 seq526 100 6e-16 seq291 93.3 9e-14 seq1113 84.2 5e-11 >seq1195 Length=66079 Score = 179 bits (198), Expect = 8e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| |||||||||||||| || ||||| | ||| || | || ||||| Sbjct 11451 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCA 11392 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| ||||| ||||| |||||||| ||||| ||||||||||||||| Sbjct 11391 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 11332 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || || | ||||| ||||| ||| ||| ||||||||||| | |||||| Sbjct 11331 ATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTT 11272 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 11271 CCGGTAAGGGTTTTAACGAAGATTTGCAT 11243 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| || |||||||| || || ||||| | |||||| | |||||||| Sbjct 12135 ACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCC 12076 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| ||||| || | ||||| || |||||||| || || ||||| |||||| Sbjct 12075 AATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGA 12016 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || | |||||||| || || ||| || |||||||||| |||||| Sbjct 12015 ATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTA 11956 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||||| || | |||||| Sbjct 11955 CCAGTAAGTGTTTTTACAAAAATTTGCAT 11927 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || |||||||||||||||||||| || | ||| |||| ||||| || || || Sbjct 11901 TGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCAAGTTGT 11842 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || || ||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct 11841 TTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGAATCTTT 11782 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || | || ||||| || ||| || ||||| | |||| || ||||| || Sbjct 11781 GCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTTCCAGTT 11722 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 11721 AGAGTTTTAACAAAAATTTGCAT 11699 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||||||||| ||||||||||||||||| |||| ||| |||| ||||| || Sbjct 11680 AACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTC 11621 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || ||||| ||||| || || ||||| |||||||| || || || || || ||||| Sbjct 11620 AAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTG 11561 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || || | || ||||| ||||| || || || | ||| | || || Sbjct 11560 AATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTT 11501 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | |||||| Sbjct 11500 GCCGGTGAGTGTCTTTACGAAGATTTGCAT 11471 >seq1291 Length=36373 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || |||||||||||||||||||||| ||| | | |||||||| | ||| ||||| Sbjct 19806 GTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCA 19865 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | |||||||| || || || || |||||||| ||||||||||||| ||| Sbjct 19866 GCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTTTG 19925 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||| || |||||| ||||| | |||| || || || || | ||| Sbjct 19926 ACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTT 19985 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 19986 TTAACAAAAATTTGCAT 20002 >seq100 Length=143921 Score = 136 bits (150), Expect = 9e-27 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || |||||||||||||| ||||| | | ||| | ||||||||| Sbjct 59366 ACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCC 59425 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| ||||||||||| ||||| || |||||| Sbjct 59426 AATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 59485 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || ||| || || | ||||| || || | || || ||||||||||||| || | Sbjct 59486 ATCTTTGCTTTAACTTGATCAATAGTATCATTGGAC--TCGACTTCAAGGGTAATGGTTT 59543 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || | || || ||||| | |||||| Sbjct 59544 TCCCAGTAAGGGTCTTGACGAATATTTGCAT 59574 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || |||||||||||||| ||||| | | ||| | |||||||| Sbjct 58454 ACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCC 58513 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | ||||| || ||||||||||| ||||| || |||||| Sbjct 58514 AATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGA 58573 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || | || ||||| || || || ||||||||||||| || || Sbjct 58574 ATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTA 58633 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 58634 CCGGTGAGGGTCTTGACGAAAATTTGCAT 58662 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || |||||||||||||| ||||| | | || | |||||||| Sbjct 58910 ACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCT 58969 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| |||||||| || |||||||| |||||| Sbjct 58970 AATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGA 59029 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || | || ||||| || || || |||||||| |||| || || Sbjct 59030 ATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTA 59089 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 59090 CCGGTGAGGGTCTTGACGAAAATTTGCAT 59118 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||| ||||||||||| || || || | | || | |||||||| Sbjct 59138 ACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCT 59197 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| ||||| || || |||||||| |||||| Sbjct 59198 AATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGA 59257 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || | || ||||| || || || |||||||| || | || || Sbjct 59258 ATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTA 59317 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||||| ||||| | |||||| Sbjct 59318 CCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || || ||||||||||| || || | | ||| | |||||||| Sbjct 58682 ACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCC 58741 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| ||||| || || ||||| || |||||| Sbjct 58742 AATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGA 58801 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || | || ||||| || || || |||||||| |||| || || Sbjct 58802 ATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTA 58861 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | |||||| Sbjct 58862 CCGGTGAGAGTCTTGACGAAAATTTGCAT 58890 >seq1502 Length=20690 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || || ||||| ||||| ||||| ||||||||||| | |||| || | |||||||| Sbjct 12979 ACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAG-GTACGTCCATCTTC 12921 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || ||||| | ||||| || || || |||||||||||||||||||| Sbjct 12920 CAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTG 12861 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || || || | |||||||| || || || |||||||| |||| || || Sbjct 12860 AATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTT 12801 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | |||||| Sbjct 12800 ACCGGTAAGAGTCTTAACGAAAATTTGCAT 12771 Score = 111 bits (122), Expect = 3e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| ||||||||||| ||||| || |||| | ||| | |||||||| Sbjct 12752 AACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCTTC 12693 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||| ||||| |||||||| | ||||| || ||||||||||| ||| Sbjct 12692 CAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 12644 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 ||| || || || || || | || |||||| |||||||| || ||||||||||||||||| Sbjct 13145 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 13086 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| |||||| | ||||| || || ||| ||| |||||||| |||| || || || Sbjct 13085 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 13026 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || | ||||| Sbjct 13025 GGTGAGGGTCTTTACAAAAATCTGCAT 12999 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || |||||||||||||| ||||| ||||| | ||||||||||| ||| ||| ||| Sbjct 12562 ATACCTTCTTTGTCTTGGATTTTGCCTTTGACTTGGTCAATGGTGTCAGAAGATTCAACT 12503 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | ||||| || || | ||| |||||||| | |||||| Sbjct 12502 TCAAGAGTGATAGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 12456 >seq526 Length=44740 Score = 100 bits (110), Expect = 6e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||||| || | || ||||||| ||||||||| ||||| | | |||| | Sbjct 29538 AGTCTAAGTACAAGATGCAACGTAGACTCTTCTTGAATATTATAATCTGATAAAGTTTTT 29597 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | |||||||| || || |||| ||||| ||||| ||||||||||||||| Sbjct 29598 CCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGGAATGCCTTCT 29657 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGG 195099 || | | | || || | | ||||| ||||| ||| || | || ||| Sbjct 29658 TTTTTCTCGACCTTAGATTTAATCATATCAATAGTGTCGCTTGAA---TCAAAATCTAGG 29714 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||| || ||||| ||||| ||||| || || Sbjct 29715 ATAACTGTTTTTCCGGTCAATGTTTTCACAAA 29746 >seq291 Length=210698 Score = 93.3 bits (102), Expect = 9e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 ||||| | ||||| |||| ||| |||||||||| |||| ||||| | |||| || | Sbjct 181116 AGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGACAAG-GTACG 181058 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||| | ||| | || || || ||||| |||||||| || |||||||| ||||| Sbjct 181057 TCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAATTCCTTC 180998 Query 195042 TTTGTCTTGAATTTT 195056 |||||| | ||| || Sbjct 180997 TTTGTCATAAATCTT 180983 >seq1113 Length=64455 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 194959 ATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 ||||||||||| | ||| | |||||||| || |||||||| || || || | || | Sbjct 45649 ATATTGTAATCACTTAAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTT 45590 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 ||||| ||||| || || |||||||| || ||||||| || | | ||||| || Sbjct 45589 TGTTGATCTGGTGGTATACCTTCTTTTTCAGTAATTTTTGTTTTTAATTGATCAATTGTA 45530 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACAC 195134 || | || ||||||| || | || ||||| || || ||||| ||| |||| Sbjct 45529 TCACTAAACTCGACTTCAATTGTTAGAGTTTTTCCAGTTAATGTTTTAACGTACAC 45474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109335865431284