Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1373 351 1e-91 seq178 277 2e-69 seq452 123 3e-23 >seq1373 Length=28076 Score = 351 bits (388), Expect = 1e-91 Identities = 676/991 (68%), Gaps = 37/991 (4%) Strand=Plus/Minus Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA-CACA 48177 ||||||| ||||||||| || | |||| ||| |||||| |||| ||| || | Sbjct 3534 TAACTTC--AAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAA 3477 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | || ||||| |||| || || || ||||||| | ||| | | |||||| | Sbjct 3476 TAAACT-CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTG 3418 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 | ||||||||||| | | | |||||| || ||| |||| |||| | || | || Sbjct 3417 CATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAA 3358 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | || | || |||| |||||| | ||||||||| || || | | || || ||||| | Sbjct 3357 AATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGT 3298 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 | ||||||||||| | |||||| |||||||| |||||||| | |||||| || | ||| | Sbjct 3297 TTCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTC 3238 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 ||||||| |||||| ||||| | ||||||| ||| | || | || ||| ||| Sbjct 3237 CATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGT 3178 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | ||| ||||||||||| | ||||| || | || || ||| | |||||||| | Sbjct 3177 TCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGA 3118 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 |||| ||||| ||||||| ||||| |||| ||||||||||| || | ||| || | Sbjct 3117 TTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAG 3058 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 || || | |||||| || || |||||||| ||| |||| | || ||||| | || | Sbjct 3057 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 2998 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717 | || ||||||||| ||| || ||||| | || || || | | ||| ||||| | Sbjct 2997 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 2938 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| ||| || | || ||| ||| | |||| |||||||| ||| |||| | Sbjct 2937 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 2878 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTA 48837 |||||||| |||||||| || ||| | | || |||||| ||| || | ||||| | Sbjct 2877 GAGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAA 2818 Query 48838 TTCTTTCCTTA-TGTTTATATACTACATCCATTACATTTTT-TGATATAATTGA------ 48889 | ||||| | |||| || || | || || | ||||| || || ||||| Sbjct 2817 GTTTTTCCGAATTGTTCAT-CACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCG 2760 Query 48890 -TTCC--------------------TTGTAAAGATCTTCTACAACATCACTAAATAtttt 48928 |||| || ||||||||||| ||||||| ||| | ||| Sbjct 2759 TTTCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTT 2700 Query 48929 ttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGG 48988 ||| |||||||||||||||||||| | || || | |||||| | | ||||| || || Sbjct 2699 TTTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGG 2640 Query 48989 ATGAATTGTTGTACATGTAC-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAG 49047 ||| | || || ||| ||| | ||||||| || || |||||||||| ||| Sbjct 2639 ATGTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGC 2581 Query 49048 TTACACCTGTATATATTCCTTGAATAACTTT 49078 | |||||| ||| | |||| ||| || || Sbjct 2580 TAACACCTTGATAAACTCCTGAAATGACCTT 2550 Score = 149 bits (164), Expect = 7e-31 Identities = 228/329 (69%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 47315 AGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATA 47374 ||| ||||||||||||||||| |||| || || | || || || || || ||||| Sbjct 4559 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 4500 Query 47375 TGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC 47434 ||||| | | |||||||| || || ||||| | ||| ||||| |||||||| | ||| Sbjct 4499 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 4440 Query 47435 AACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 | ||||| ||||| ||| |||| || | ||| | |||||||| Sbjct 4439 GAGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATC 4380 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 ||| | ||| | || |||||||||| | ||| ||||| | ||| ||||| | ||| Sbjct 4379 CCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGG 4320 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 || || | ||| | | ||| || ||| || || | |||||||| |||||| || Sbjct 4319 TGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAA 4260 Query 47615 TGCACTATAATATATTGTTTCAAATATTT 47643 ||||| || ||| ||||| |||||||||| Sbjct 4259 TGCACCATGATACATTGTCTCAAATATTT 4231 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47058 TAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47117 || ||||||||||||||||| || | | | | ||||| | |||||||||||||||| | Sbjct 4895 TACAAATGCATACTAGTTAACTTTGCTTTAGTCGGTTCCGCAATATGAATATTAAGACTT 4836 Query 47118 TGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGT 47177 ||| ||||||||||| ||||| | ||| || |||||||| | |||||| |||| | | Sbjct 4835 TGAGATTGATCAATAAAAGCACCACGATCGGCCGCCATATCAATAATAACTTTTTGCGAT 4776 Query 47178 ATCTCCCATACTGTTTTATA 47197 || |||||| |||||||| Sbjct 4775 ATTTCCCATGTAGTTTTATA 4756 Score = 102 bits (112), Expect = 9e-17 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 47856 TTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTT 47915 |||||| ||||||| | | ||||||| || | ||||||||||| || |||| Sbjct 3870 TTATTTTCAACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCC 3811 Query 47916 GGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTT 47975 || | | ||||| | || || | ||| | ||||| ||||||||| ||||| | |||| Sbjct 3810 GGGCTCGAATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTT 3751 Query 47976 TGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 || |||||| ||||| | || ||||| |||||| | ||||| || ||||| Sbjct 3750 TGTTGATTAGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCG 3691 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAAC 48064 ||||| ||||||| || | | |||| || Sbjct 3690 ATCTGGGATTCAAGAATTGCTGTCCAGAC 3662 >seq178 Length=73968 Score = 277 bits (306), Expect = 2e-69 Identities = 374/518 (72%), Gaps = 6/518 (1%) Strand=Plus/Minus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| ||||| ||||||||| || | || | ||||||||||||||| ||||| || | Sbjct 5531 TCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTT 5472 Query 18716 CTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATC 18775 ||| || | |||||||||||||| ||||| | | |||||| | |||| | Sbjct 5471 GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCAC 5412 Query 18776 CTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAAT 18835 | | | | | || || |||||| |||||||||| ||||||| | ||||| | || | Sbjct 5411 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGT 5352 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 |||| || ||||| ||||| |||| ||| ||||| | ||||||||||||||| | || | Sbjct 5351 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 5292 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG--GTATA-GAAGATGTTTAA 18952 | || | |||||||| | | || | || | ||||| || | ||||||| | | Sbjct 5291 CTTCCGCTATAATAGCTTCTAC---AGTTTTTGTTGGAGGTCGTGCACGAAGATGAGTGA 5235 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 | | | |||||||||||||||||| | ||| || |||| | || | ||| || |||| Sbjct 5234 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 5175 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | ||||| || ||||||| ||||||||| |||||||| || || || || || | ||||| Sbjct 5174 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 5115 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 |||||||||| ||||| || || ||||| || || || | ||| || | || || | Sbjct 5114 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGATTCCT 5055 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTT 19170 ||| ||||||| || |||||||| || || ||| Sbjct 5054 TATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 5017 Score = 192 bits (212), Expect = 7e-44 Identities = 230/306 (75%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 || || | ||| | ||| ||||| | ||||||||||||||| |||||||| || Sbjct 4883 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4824 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 ||||||||||| ||||||||||||||||||| || || |||||| ||| ||| | ||| Sbjct 4823 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4764 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || ||||||||||| || || ||||| || ||||| || || || || || |||| Sbjct 4763 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4704 Query 19405 A--AATGTTT-TTCATC-TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATC 19460 | ||| ||| |||||| | | ||| || | ||||||||| ||||| || || | || Sbjct 4703 AAGAATTTTTCTTCATCGTTAAGTTTAT-ACTCCCAATCATTCATATCCTTGGAAAGGTC 4645 Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATAT-CAC 19519 ||||| ||||| |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 4644 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4585 Query 19520 GATATT 19525 ||||| Sbjct 4584 AATATT 4579 >seq452 Length=54095 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 ||||||||| |||| | | || ||| || || |||||||| || || || | | Sbjct 32564 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 32505 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||| || |||||| ||||||| |||| ||||||| || | || ||||| |||||| Sbjct 32504 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 32445 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 ||| | | ||| ||||| | ||| || || ||||| |||||||| ||||| | ||| Sbjct 32444 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 32385 Query 48729 GGTCTTTCAACAA 48741 ||||||||||||| Sbjct 32384 GGTCTTTCAACAA 32372 Score = 93.3 bits (102), Expect = 5e-14 Identities = 244/370 (66%), Gaps = 20/370 (5%) Strand=Plus/Minus Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACTTGTATATGGTTCTAT 47383 ||||||||| ||| || ||| ||| || ||| ||||| ||||| |||||||| | Sbjct 34263 TTGAAATTC-CCACTTAATAC---ACGTCTTTGATAAATATTGCTTGTGTATGGTTCAAA 34208 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 ||||||| ||||||| ||| ||| || ||||| || ||||| | ||||| || || Sbjct 34207 GCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAACAA 34148 Query 47444 GCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATC 47503 |||||||||||||||| |||| | ||| ||||| |||| Sbjct 34147 AGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGATC 34088 Query 47504 TGA---TGGAACAACATT---CCAAAAATCATATTGAAGAATTCCTTTACTTATC-GGAG 47556 ||| | | || | | ||| || || || ||||| || |||||||| ||| || | Sbjct 34087 TGAAGGTTGTACTCCTGTTCCCCACAATTCGTAATGAAGGATACCTTTACTAATCGGGGG 34028 Query 47557 AACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCA--- 47613 |||| | |||||| |||||||| | | ||| | |||||| || ||| | Sbjct 34027 AACCCTCATATGTAGGGTAAGGACCATCTTTAGCAGCAATTTCACATGATGATTCAAGAG 33968 Query 47614 ATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATT 47673 |||| || ||||| |||||||| || | | ||| || || | ||||| |||| Sbjct 33967 ATGC---ATGATATAAAGTTTCAAAAATATCTCGGTTAAGCTTACGCGCTTCATCAGATT 33911 Query 47674 CAAAAGGATA 47683 | | ||||| Sbjct 33910 CCCATGGATA 33901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562036765757280