Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq178 208 9e-49 >seq178 Length=73968 Score = 208 bits (230), Expect = 9e-49 Identities = 352/502 (70%), Gaps = 16/502 (3%) Strand=Plus/Minus Query 36868 TATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTC 36927 || |||||||||| ||||||||| ||| || ||| |||| || |||||||| || | Sbjct 5534 TACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTAC 5475 Query 36928 CTTCTAGTGATATATTT---TCCATAAAATCAAATGGATTAGATGTATTATATA-TAGTA 36983 ||| || | || || |||||||||||||| ||||| || |||||| | | | Sbjct 5474 CTTGTA---AACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTG 5418 Query 36984 CTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGT 37043 || || | | | || | | ||||| || |||||||| || ||||| ||||| Sbjct 5417 CTCCACCA-AGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAA 5359 Query 37044 TCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATT 37103 | ||| |||||||||| || ||||| | ||| ||| | |||| || ||||||| Sbjct 5358 TTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATT 5299 Query 37104 ATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTA--AAT 37161 | || || || ||||| || | || || ||||| || | | | || Sbjct 5298 GTAACCGCTTCCG---CTATAATAGCTTCTACAGTTTTTGTTGGAGG-TCGTGCACGAAG 5243 Query 37162 ATT--TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTC 37219 || | || || | |||||||||||||||||| || |||||||||| | || | ||| Sbjct 5242 ATGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTC 5183 Query 37220 ATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAA 37279 || ||||| |||||||||||||| | |||||||| || | |||||| |||| || || Sbjct 5182 GTTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAA 5123 Query 37280 AGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 || |||||||||||| || |||||||| || ||||| |||||||||||| | | || | Sbjct 5122 AGCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGA 5063 Query 37340 TGAACTATAATCAGAAATCCAT 37361 || | ||| ||||||||| Sbjct 5062 AGATTCCTTATCGGAAATCCAT 5041 Score = 118 bits (130), Expect = 1e-21 Identities = 180/255 (71%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 ||||||| |||||| | | |||||||| || || |||||||| || |||||| Sbjct 4877 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 4818 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 || ||||||||||| || ||||| | | ||| || || ||| ||| | | |||| Sbjct 4817 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCCACTAAA 4758 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 |||||||| || || ||||| || |||||||| || | ||| | ||||| | Sbjct 4757 TTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAAT 4698 Query 37626 CTTTCATCATTTGATAATTTT----TTCCAATCATTAATATCTTTTGATAAATCAACTTC 37681 |||| ||| | | ||| ||| | ||||||||| ||||| || || | |||||||| Sbjct 4697 TTTTCTTCA-TCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTC 4639 Query 37682 ATCAACGGTCCAAAA 37696 ||||| |||||||| Sbjct 4638 CTCAACAGTCCAAAA 4624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592240894602080