Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1195 127 2e-24 seq1502 98.7 8e-16 seq100 87.8 1e-12 >seq1195 Length=66079 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || |||||||||||||||||| ||||| || |||| Sbjct 11916 AGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGT 11857 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || |||||||| || || || || || ||||| | ||||| || || Sbjct 11856 CCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCT 11797 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| |||||| | | | | || || | ||| || |||| ||| Sbjct 11796 TTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTA 11737 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | |||||| |||||||| ||||| Sbjct 11736 ATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || || ||||| || ||| | ||| | || ||||| |||||||| || || Sbjct 12117 TCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAA 12058 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTA-CAGA 48694 |||| || || ||||| | || | ||||| || || ||| ||| |||||| | Sbjct 12057 ATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAAT-TTTGGTTTTAACCTG 11999 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || | || ||||| | |||||||| || || || | |||||||| Sbjct 11998 ATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTAC 11939 Query 48755 AAAAATCTGCAT 48766 |||||| ||||| Sbjct 11938 AAAAATTTGCAT 11927 >seq1502 Length=20690 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || | ||| | ||| || || ||| ||||| ||||||||||| || Sbjct 12997 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 12938 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || ||||| || ||||||||||| |||| || || ||||||| |||| Sbjct 12937 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 12878 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| |||||| ||| || | | | ||||| | ||| || Sbjct 12877 ATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACT 12818 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| ||||| || || | ||| || || ||||| ||||| Sbjct 12817 TCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 12771 >seq100 Length=143921 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||| || || |||| | | || | || ||||| || |||||||| || Sbjct 58700 TCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAG 58759 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | ||| | || ||||| || ||||||| ||| || | Sbjct 58760 ATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 58819 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| || || | ||||| ||||| || || | ||| || || Sbjct 58820 TCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACG 58879 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 58880 AAAATTTGCAT 58890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380890003275396