Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1195 89.7 4e-13 seq100 86.0 5e-12 >seq1195 Length=66079 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || || || || || ||| ||| ||| |||| Sbjct 11243 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 11302 Query 28614 GAGACGGTGG-CCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | | ||||||||| || |||||||| ||| | ||| ||| || Sbjct 11303 GACACTATTGACCAAGTTAAAGCAAAAATTCAA-GACAAAGAAGGAATTCCCCCAGACCA 11361 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | ||||| || || ||||||||| | ||||| | || | | |||||||| Sbjct 11362 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAA 11421 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||| || ||||| || | ||| | || | || ||||| || Sbjct 11422 CATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGGTAT 11472 >seq100 Length=143921 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || |||||||| || || ||| || | || Sbjct 59346 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 59287 Query 28614 GAGACGGTGG-CCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | | ||||||| | || || ||||| || | ||| |||||| Sbjct 59286 GATACCATAGACCAAGTTAAAGCAAAGATTCAA-GATAAAGAAGGTATCCCCCCAGATCA 59228 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | ||||| || || |||||||| |||||| | || || | || ||||| Sbjct 59227 ACAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAA 59168 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||| ||||| || | ||| | | ||| |||| || || Sbjct 59167 CATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 59117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425351647265508