Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1373 152 2e-31 seq49 96.9 1e-14 seq194 95.1 4e-14 seq93 91.5 4e-13 seq591 86.0 2e-11 >seq1373 Length=28076 Score = 152 bits (168), Expect = 2e-31 Identities = 304/447 (68%), Gaps = 10/447 (2%) Strand=Plus/Minus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || ||||| ||||| | |||||| ||||| | || | || ||| |||||||| Sbjct 3298 TTTCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATT 3239 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| ||| ||||| ||||| ||||| || || | | |||| |||||||| Sbjct 3238 CCATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATG 3179 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | | ||||||||||||| |||||||| |||||| || | ||||| | Sbjct 3178 TTCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAG 3119 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA---CGAACTTAATTGAGGT 156296 || || || || |||||||||| ||| | || ||| | || |||| | ||||||| Sbjct 3118 ATTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAA---AGTTGAGGT 3062 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 | ||||| ||||| || || | || || | ||| ||| |||| |||| | ||||| Sbjct 3061 CTAGGTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATC 3002 Query 156357 TAATCGTATGTCTCCTTA--ATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCC 156414 || ||| || || || | || || | || | |||||||| | | | || | Sbjct 3001 AGATTGTAAGTTTCAATAGCAGCT--TCGATATCATCTCCGTGAATCCCAACCGCTACGC 2944 Query 156415 TCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGC 156474 ||| |||||| || |||||||| ||| |||| | ||||| | ||| || | | Sbjct 2943 GCATAAGCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATC 2884 Query 156475 GTTCCAGAGTTTTAAACCCGAAATAAT 156501 ||| ||||||||||| || ||||||| Sbjct 2883 TTTCAAGAGTTTTAAATCCAAAATAAT 2857 >seq49 Length=212187 Score = 96.9 bits (106), Expect = 1e-14 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 380906 AAGAACTACTATGGTTTATTAAGGGTGATACATCAAACAGAAGGCTAAAGGCACAGAATG 380965 ||||| || ||||||||||||| ||| ||||| | || | ||| | | | | Sbjct 170062 AAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGGTA 170003 Query 380966 TAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAATA 381025 | | || ||| | ||||||||| |||||| | ||| ||| ||| ||| | ||| Sbjct 170002 TTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACATA 169943 Query 381026 ACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGATT 381085 |||||| ||| | |||||| |||| ||||| || |||||||||||| || || | Sbjct 169942 GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTGAGT 169883 Query 381086 ATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCA 381128 | | |||| |||| ||||| |||||||| ||||| || || Sbjct 169882 ACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCA 169840 Score = 91.5 bits (100), Expect = 4e-13 Identities = 222/330 (67%), Gaps = 10/330 (3%) Strand=Plus/Minus Query 381223 ATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAATGTTTCGGCTGGTAATAAGTTA 381282 ||||| |||||||| || ||||| || ||||| ||| |||| || | || | ||| Sbjct 169677 ATGGCATTACCACCATGTCATATGTTTTGCCAATTCTATGTATCAAATACGAAAAGATTA 169618 Query 381283 AGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGGTCTGGGTGTTCCATTCAATATTGCT 381342 ||| | | ||||| | |||||||||| || ||||| ||||| || ||||| Sbjct 169617 TCGTGTCTTCTTTATCAAAGATCATGTGATGTTGGACTTGGTGTACCATTTAACATTGCA 169558 Query 381343 TCGTATTCTATGCTTACTCGTTTAATTGCTCATCACACTGGACTAATTGCGGGTGATTTT 381402 ||| |||| | |||| | | ||||||||| || || | | | ||||| ||| Sbjct 169557 AGCTATGCTATATTAACTCATATGATTGCTCATGTAACGGGTTGTAGTCCTGGTGAATTT 169498 Query 381403 GTTTATTATCTCGGTAATACTCATATATACGACGACCATATTGAGAATTTAAAAGTTCAA 381462 || || | ||| ||||||||||||| | || |||||| | ||||||| |||| Sbjct 169497 ATTCATACCATGGGTGATACTCATATATATAATGATCATATTAATGCTTTAAAAACTCAA 169438 Query 381463 A-AAACCAGGACACCATATGCGTTTCCAACGTTAGA----TATACTAAATACTTACGATA 381517 | | | || |||| | || ||||| |||| || || || || | ||| ||| Sbjct 169437 ATCGAACGTGA-ACCAAAAGCATTTCC-TCGTTTGAAATTTAGACGCAA-AATTA--ATA 169383 Query 381518 ATATTGAAGATTACACGGTTGATGATTTTA 381547 ||||||| |||| | ||||||||||| Sbjct 169382 ATATTGATGATTTTAAATATGATGATTTTA 169353 >seq194 Length=170327 Score = 95.1 bits (104), Expect = 4e-14 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| || ||| || ||||| | || || || || || ||||||||| | Sbjct 94494 AATTTCTTTAAGACGTGGTACACCGAGAGTAACATTT---TTACTCGATACACCAGCATA 94550 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||||||||| ||||| | ||||||| || ||||||||| |||||| |||| | Sbjct 94551 ATGGAAAGTATTTAGAGTCATCTGAGTAGCCGGTTCACCAATAGATTGTGCGGCAACAGT 94610 Query 301935 ACCAACCATTTCTCCTGG 301952 |||||||||||| ||||| Sbjct 94611 ACCAACCATTTCACCTGG 94628 >seq93 Length=91828 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||||| |||||||| || ||||| || || ||||| ||| | | |||| | Sbjct 8481 ATTGTCATACGACTAGGAATAGCGTGTGGATTTATAATAATGTCAGGTGTAATACCATTA 8540 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAGTTCCCTTTTGTCCGTGA 251964 |||| || |||||||| | || | | | || ||||||| ||||| || || || ||| Sbjct 8541 GCAGCAAATGGCATATCTTCTTGATGATAAGTGATTCCAATTGTTCCTTTCTGACCATGA 8600 Query 251965 CGAGAACTGAACTTATCACCAAT 251987 ||| ||| ||||| ||||| Sbjct 8601 CGACTCGCGAATTTATCTCCAAT 8623 >seq591 Length=40351 Score = 86.0 bits (94), Expect = 2e-11 Identities = 220/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||| ||| |||| || |||||||| || | || || | ||| || | | || | | Sbjct 8560 CCTTGATTTTCCAATTGCGTCAATTTCATCCACAAATATTATACAAGGTGCGTGTTTTTT 8501 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 ||| ||||||| || || | ||| | || | |||| ||||||| ||||||| ||||| Sbjct 8500 CGCGTTTGCAAACAAATCACGTACTCTAGACGGACCAACACCAACAAACATTTCAACAAA 8441 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | ||||| | ||||| ||| ||||| || || || | || || Sbjct 8440 TTCAGATCCTGATACACTTAAGAATGGGACACCAGCTTCACCCGCAGTAGCTTTTGCAAG 8381 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || ||||| || || || || || ||| | | || ||||||| ||| || || Sbjct 8380 CAAAGTTTTACCGGTACCTGGAGGACCACTTAAAATGGCACCTTTTGGTATTTTAGCACC 8321 Query 289260 AGCAGACTTATATTTCTCAG--GGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATA 289316 || ||| | | ||| || ||||| || |||| |||| |||| | ||| | Sbjct 8320 --CAATCTT-TCATAAGCAGTCGGATCTTTCAAGAATTTAACAAATTCCATTATTTCCTC 8264 Query 289317 TTTTGCCTCATCACAT-CCTGCTACATC 289343 ||| || ||||| ||| || |||||||| Sbjct 8263 TTTGGCTTCATC-CATACCAGCTACATC 8237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471624271238924