Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1291 152 5e-32 seq100 143 2e-29 seq1502 141 8e-29 seq1195 136 4e-27 seq1373 123 2e-23 seq2455 96.9 3e-15 >seq1291 Length=36373 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| || || |||||||| ||||| | ||||| ||| | | Sbjct 20002 ATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGC 19943 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||| || ||||| ||||||||||| || || |||||| Sbjct 19942 GATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAA 19883 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||||| || ||||| || |||||| | || || | || || | || ||||| || Sbjct 19882 CAACGTTTAATATTTGCTGGTAAACAGTTAGAAGA-TGGACGTTCACTTTCCGATTACAA 19824 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 |||||||| ||||| ||| |||||||||| | || || ||||| ||||| Sbjct 19823 TATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGGCGG 19773 >seq100 Length=143921 Score = 143 bits (158), Expect = 2e-29 Identities = 157/206 (76%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||||||||| ||||||||||| || || || |||||||| || | Sbjct 59346 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 59287 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| |||||||| || || || |||||| Sbjct 59286 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 59227 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 ||||| |||||||| || || ||||| | || ||| ||| |||| |||||| ||| Sbjct 59226 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGT---ACATTGTCAGACTAT 59170 Query 24881 AACATTCAAAAGGAATCGACACTACA 24906 ||||||||||| ||||| || || || Sbjct 59169 AACATTCAAAAAGAATCCACTCTCCA 59144 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 59118 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 59059 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| |||||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 59058 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 58999 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || ||||| | || ||| | | ||||||||||||| Sbjct 58998 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAAT 58939 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 58938 ATTCAAAAAGAATCAACTCTCCA 58916 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 58890 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 58831 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| || ||||| || || || |||||| Sbjct 58830 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 58771 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| ||||| ||||| |||| ||| | | | || || ||||| Sbjct 58770 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 58711 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||||||||| || || || Sbjct 58710 ATTCAAAAGGAATCAACTCTCCA 58688 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || ||||| ||||| || ||||| || ||| Sbjct 59574 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 59515 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || || ||| |||||| ||||| || |||||||| ||||| |||||| Sbjct 59514 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 59455 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| || ||||| || || ||||| |||| ||| | | | ||||||||||||| Sbjct 59454 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 59395 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 59394 ATTCAAAAAGAATCAACTCTCCA 59372 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 58662 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 58603 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| || ||||| || ||||| ||||| Sbjct 58602 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 58543 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || ||||| |||| ||| | | | || |||||||| Sbjct 58542 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAAT 58483 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 58482 ATTCAAAAAGAATCTACTCTCCA 58460 >seq1502 Length=20690 Score = 141 bits (156), Expect = 8e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||||||||||||||| || |||||||| || | Sbjct 12771 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 12830 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || || ||| ||||| |||||||||||||| || || || ||||| Sbjct 12831 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 12890 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||||||||| ||||| |||| ||| | | | |||||||||| || Sbjct 12891 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 12950 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 12951 ATCCAAAAGGAGTCAACTCTCCA 12973 Score = 116 bits (128), Expect = 3e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| ||||||||||| || ||||| ||| | | Sbjct 12999 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 13058 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | ||| || || |||||| |||||||||||||| || ||||| |||||| Sbjct 13059 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 13118 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||| | ||||| ||||| || |||||| Sbjct 13119 CAAAGATTGATTTTTGCTGGCAAACAG 13145 >seq1195 Length=66079 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| ||||| || ||||| ||||| | ||||| || | || Sbjct 11699 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 11758 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || |||||| |||||| |||||||||||||| || || || ||||| Sbjct 11759 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 11818 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || ||||| ||||| || |||||| ||| | | || || || || Sbjct 11819 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 11878 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| || || ||||| || |||||| Sbjct 11879 ATTCAAAAAGAGTCAACACTTCATTTGGTG 11908 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||| || ||||| || || || || || ||||| ||| | || Sbjct 11243 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 11302 Query 24764 GACACAGTAGAA-ACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | | |||| ||||| || ||||||||||||||||| || || || || Sbjct 11303 GACACTATTGACCAAGTTAAAGCAAAA-ATTCAAGACAAAGAAGGAATTCCCCCAGACCA 11361 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | || || || || ||||| || || || | | | | ||||||||||| Sbjct 11362 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAA 11421 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| || || || || || | || | ||| | |||||||| Sbjct 11422 CATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 11469 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || ||||| || ||||| || || || ||| | | Sbjct 11927 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 11986 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || ||| ||||| ||| || ||||| ||||| || || ||||| ||||| Sbjct 11987 GATACCATTGATCAGGTTAAAACCAAA-ATTCAAGATAAAGAGGGTATCCCTCCAGATCA 12045 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||| || || || || || |||| ||| | | | || |||||||| Sbjct 12046 GCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAA 12105 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| ||||| ||||| || || ||| Sbjct 12106 CATCCAAAAAGAATCAACTCTTCAC 12130 >seq1373 Length=28076 Score = 123 bits (136), Expect = 2e-23 Identities = 114/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 139092 GTTGCACACCGCCACTTCGTCGGGG-TCGCTGTATTCGACAATTTCGGCACACAAATTAC 139150 ||| || || || ||||| || ||| ||| ||||| ||||| || | ||||||||||| Sbjct 3832 GTTACATACAGCAACTTCATCCGGGCTCGAA-TATTCAACAATCTCTGTACACAAATTAC 3774 Query 139151 TACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAA 139210 |||| ||||| ||||| | |||||||||||| ||| || ||||||| ||||||||| | Sbjct 3773 TACATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTGTAGA 3714 Query 139211 GCATATACGGTGTGCCAGTTTC 139232 ||||||| ||||| || ||||| Sbjct 3713 GCATATATGGTGTACCCGTTTC 3692 >seq2455 Length=10122 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || || || ||| ||||||| ||| || ||||| ||| | | ||||| || ||| | Sbjct 6977 ATACAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCT 7036 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||||| || || ||| | | || ||||| |||||||| | ||||| |||| Sbjct 7037 GATACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAG 7096 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||||||||||||||||| || ||||| ||||| ||| Sbjct 7097 CAACGTTTGATCTTTGCTGGTAAACAACTGGAAGAT 7132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449839945622560