Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1195 122 7e-23 seq1291 93.3 3e-14 >seq1195 Length=66079 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||| |||| || ||||||||||| | ||| ||| || | Sbjct 11699 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 11758 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| || |||||| ||||||| || |||||||| | ||| |||||| Sbjct 11759 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 11818 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || |||| || |||||||| || ||||| | ||| | | |||||||| Sbjct 11819 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 11878 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||| ||||| || | || ||||| Sbjct 11879 ATTCAAAAAGAGTCAACACTTCATTTGGTG 11908 >seq1291 Length=36373 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 107550 TTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGA 107608 |||||| |||||||||||||| ||||| | || || ||||||||||| | ||| || Sbjct 20009 TTTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGA 19950 Query 107609 GGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 | ||||||| ||| | || ||| |||| ||| ||||||||||| | ||| Sbjct 19949 AAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCC 19890 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||| || | | || | ||| ||||||||| | || || | || | | || Sbjct 19889 GGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGA 19830 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| |||||||| || || || || ||| |||| Sbjct 19829 TTACAATATTCAAAAAGAATCAACATTACACTTGGT 19794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398826961839628