Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq100 150 3e-31 seq1291 125 1e-23 seq1502 122 1e-22 seq1113 114 2e-20 seq322 109 9e-19 seq768 104 4e-17 seq1195 102 1e-16 seq2455 93.3 7e-14 seq526 91.5 2e-13 >seq100 Length=143921 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || |||||||||||| |||| || || | Sbjct 59117 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTG 59058 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | ||||||| || || ||| ||||||||| || || || ||||||| Sbjct 59057 ATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAAC 58998 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||||||||| ||| | | ||||| |||||||||||| Sbjct 58997 AACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAATA 58938 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 58937 TTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 58890 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || | || || ||||| ||||| |||| || || || | Sbjct 59573 TGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATG 59514 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | | || ||| || || ||| ||| ||||| ||||| || ||||||| Sbjct 59513 ATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAAC 59454 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || || |||||||||||| Sbjct 59453 AACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAATA 59394 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 59393 TTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 59346 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || |||||||| ||| |||| ||||| | Sbjct 59345 TGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTG 59286 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||||||||| || || || ||||||| Sbjct 59285 ATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAAC 59226 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||||||||| ||| | | || || |||| ||||| | Sbjct 59225 AACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACA 59166 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 59165 TTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 59118 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || |||||||||||| |||| || || | Sbjct 58889 TGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTG 58830 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||| ||||| || || || ||||||| Sbjct 58829 ATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAAC 58770 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || ||| | || ||||||| Sbjct 58769 AACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATA 58710 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 58709 TTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGGTA 58662 Score = 104 bits (114), Expect = 4e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||||||||| |||| || || | Sbjct 58661 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTG 58602 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||| ||||| ||||| || ||||| | Sbjct 58601 ATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGC 58542 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || ||| | |||||||||| Sbjct 58541 AACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAATA 58482 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATA 146263 | ||||||||||| ||| ||||| | ||| | || | | || ||| |||| Sbjct 58481 TTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGGTCAATA 58430 >seq1291 Length=36373 Score = 125 bits (138), Expect = 1e-23 Identities = 166/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | || || ||||| |||||| | || || ||| || || Sbjct 20001 TGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCG 19942 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| | ||||| ||| ||||||||| || || || ||||||| Sbjct 19941 ATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAAC 19882 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACA----GATTAT 146207 || | | || ||||| |||||||| ||||| ||| | ||||| || ||||| Sbjct 19881 AACGTTTAATATTTGCTGGTAAACAGTTAGAAGAT----GGACGTTCACTTTCCGATTAC 19826 Query 146208 AATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||| ||||||||||| || | || || ||| | || ||| | || || Sbjct 19825 AATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 19776 >seq1502 Length=20690 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || | || || ||||| |||||| |||| ||||| | | | Sbjct 12772 TGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA- 12830 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || ||| || || ||| |||||||||||||| || ||||| Sbjct 12831 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 12890 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| ||||||||||| || ||| | || || ||||||| ||| Sbjct 12891 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 12950 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| || || ||| ||||| | || | || |||||||| |||| Sbjct 12951 ATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGGTA 12999 >seq1113 Length=64455 Score = 114 bits (126), Expect = 2e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 ||||||||||| |||||||| | || ||||| || || || ||||| ||| | | Sbjct 45483 AAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACAATTGATCAA 45542 Query 146106 GTAAAAAATAAAATACAACT--TAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTT 146163 |||||| ||||| ||| |||||||| || ||||| |||||||||||| | |||| Sbjct 45543 TTAAAAACAAAAAT--TACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAATTT 45600 Query 146164 TTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAAT 146223 |||| ||||| ||| | || ||| | || |||| ||||| |||||| || | Sbjct 45601 TTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGTTGAGT 45660 Query 146224 CGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || | |||||||||||| ||||||| || || Sbjct 45661 CCACGCTACATTTAGTATTAAGATTAAGGGGTGG 45694 >seq322 Length=141587 Score = 109 bits (120), Expect = 9e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 146129 AGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAA 146188 |||||| || || || ||||||||| | | || | || ||||||||| | || ||| | Sbjct 130852 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 130911 Query 146189 TAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 | | || ||| |||||||||||||||| | ||||| ||| | |||||||||||| |||| Sbjct 130912 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 130971 Query 146249 AAGAGGAGGT 146258 |||||| ||| Sbjct 130972 AAGAGGTGGT 130981 >seq768 Length=116656 Score = 104 bits (114), Expect = 4e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||||||| | || |||||||| || ||||| || || | || || | || ||| Sbjct 28841 CAAATATTCGTTAATACATTAACTGGTAAAACTATAACACTAGAATTAAATTTTAGTGAT 28900 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || ||| | || ||||| | ||||| || ||||||||| || || || ||||||||| Sbjct 28901 ACAATTTATAACCTAAAAGAAAAAATTCAGGATAAAGAAGGGATACCTCCAGATCAACAA 28960 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 ||| | ||||||| |||| | | || ||| | |||||| | ||||| || ||| Sbjct 28961 AGATTAGTTTTTGCTGGTATGTTACTTGAAGATGGCCGTACGTTATCGGATTACAAGATA 29020 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 ||||| | || || || ||| | ||||| || ||| || ||| Sbjct 29021 AAAAAACATTCCACAATACATCTGGTATTGAGACTAATTGGTGGT 29065 >seq1195 Length=66079 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || |||||||| | || || || || ||||| |||| || ||| ||| Sbjct 11928 TGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT- 11986 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || |||| ||||| ||| |||||| || || || || ||||| Sbjct 11987 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 12046 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | ||||| || ||||| ||||| || ||| | | || | | |||||||| Sbjct 12047 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 12106 Query 146211 ATACAAAAAGAATCGACT 146228 || ||||||||||| ||| Sbjct 12107 ATCCAAAAAGAATCAACT 12124 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| ||| | || || ||||| || || | || ||||| | Sbjct 11472 TGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGG 11531 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | ||||||| ||||| ||| ||| || || || || || || || | Sbjct 11532 ATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGC 11591 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || ||||||||| | || ||| |||| | | || || |||| Sbjct 11592 AACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATA 11651 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| ||| | ||| Sbjct 11652 TTCAAAAAGAATCCACTCTTCAT 11674 >seq2455 Length=10122 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||| || | ||||| ||| || ||||||||| | ||||| || || ||| Sbjct 6980 CAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCTGAT 7039 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || || || | || ||||| | ||| ||| ||||||||||| ||| || |||| ||| Sbjct 7040 ACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAGCAA 7099 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 | | || ||||| ||||||||| | || ||||| || || ||| |||||||||| Sbjct 7100 CGTTTGATCTTTGCTGGTAAACAACTGGAAGATAAACATACTTTGACACATTATAATATT 7159 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||| ||| | ||| | || | || ||||||| |||| Sbjct 7160 AGGGATAAATCAACTCTTCATCTCGTGCTCCGTCTAAGAGGTGGTA 7205 >seq526 Length=44740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 |||||||| || ||||||||| ||| | ||| | || | ||| |||||| | | Sbjct 29740 AAAACATTGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGCGACACTATTGATATG 29681 Query 146106 GTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTT 146165 | ||| ||| | | |||||||||||||| || || || ||| | | |||||| Sbjct 29680 ATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGCAACGTATTATTTTT 29621 Query 146166 GCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCG 146225 || ||||| ||||| || ||| | ||| ||| ||||||||||||| ||| |||| || Sbjct 29620 GCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTATAATATTCAAGAAGAGTCT 29561 Query 146226 ACTATCCATTTAGTA 146240 || | ||| | ||| Sbjct 29560 ACGTTGCATCTTGTA 29546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786065652775840