Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq49 143 3e-29 seq2423 84.2 3e-11 >seq49 Length=212187 Score = 143 bits (158), Expect = 3e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 ||||| | |||||| ||||||||||| || || ||||| |||| || | |||| Sbjct 170062 AAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGGTA 170003 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 || | ||||| | | ||||||||||||||||| ||| ||| | ||| | | | | Sbjct 170002 TTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACATA 169943 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790 |||||||||||||||| ||||| |||||||||| |||||||||||| || ||| | | Sbjct 169942 GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTGAGT 169883 Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAA 171834 | || || || |||| |||||||| || |||| || || ||| Sbjct 169882 ACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCAA 169839 >seq2423 Length=7973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 192996 ATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193054 ||||| ||| |||| |||||||||| ||| | |||| | ||||||| || ||||| Sbjct 5709 ATACCAGAATTAGGAGATAAATTTTCTTCACGTCATGGAC-AAAAAGGTGTATGCGGTAT 5767 Query 193055 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 193114 ||| |||||||||||||||||||| | ||| ||||| || |||||||| || Sbjct 5768 TATTGTACCACAAGAAGATATGCCATTTGCTGATTCTGGTATATGTCCTGATATTATCAT 5827 Query 193115 TAATCCAAATTGTATTCCGTCCAGAATGAC 193144 |||||| || | |||| || | ||||| Sbjct 5828 GAATCCACATGGATTTCCTTCACGTATGAC 5857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628450653726720