Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1373 190 5e-43 seq178 118 3e-21 seq194 95.1 3e-14 seq362 93.3 1e-13 seq177 89.7 1e-12 >seq1373 Length=28076 Score = 190 bits (210), Expect = 5e-43 Identities = 436/652 (67%), Gaps = 7/652 (1%) Strand=Plus/Plus Query 110258 AAAACTAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAA 110317 |||||| ||| || ||| |||| | | || ||| | | | |||||||| || || Sbjct 2813 AAAACTTAATTCTACGATCATTTATGATAGAGATTATAAATATAATTATTTTGGATTTAA 2872 Query 110318 AACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACA 110377 |||||||||| | ||||| | | || | ||| | | || ||||| ||||| Sbjct 2873 AACTCTTGAAAGATCTTATCTTTTACGAATAGGTGGAAAAGTTGCCGAGCGTCCCCAACA 2932 Query 110378 CATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATG 110437 ||| || | || || ||| |||| ||||| ||| ||||||| |||||| ||||||| Sbjct 2933 TATGCTTATGCGCGTAGCGGTTGGGATTCACGGAGATGATATCGAAGCTGCTATTGAAAC 2992 Query 110438 TTATGATGT-AT-TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCA 110495 ||| || | || | || ||||| || ||| || |||| || | ||||| || Sbjct 2993 TTACAATCTGATGTCAG--AAAAGTTCTTTACTCACGCATCTCCGACTTTGTTTAATGCT 3050 Query 110496 GGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATT 110555 || || | || ||| | | ||| |||||| || || || |||||||| || Sbjct 3051 GGCACACCTAGACCTCAACTTTCGAGTTGTTTTCTTTTAACTATGAAAGATGATTCAATA 3110 Query 110556 GAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATT 110615 || || || |||||| || | ||| | || | |||||||| | | || || ||| Sbjct 3111 GAGGGAATCTATGATACTTTGAAAACATGCGCAATGATTTCTAAGACTGCAGGTGGTATT 3170 Query 110616 GGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCT 110675 ||| | || ||||| | ||||| | | |||| | |||| || | | || ||| | Sbjct 3171 GGTGTGAACATTCATAACATTCGTGCGACAGGATCTTATATTGCTGGAACAAATGGTTAT 3230 Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| |||| || |||| |||||| | || | || | ||||| | |||||| ||||| Sbjct 3231 TCAAATGGAATTATTCCCATGTTACGCGTTTATAATAATACTGCTAGATATGTTGATCAA 3290 Query 110736 GGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 || || || | | | ||| | |||||||| ||| | ||| | |||||| | || || Sbjct 3291 GGAGGAAACAAACGTCCGGGCGCGTTTGCTATTTATTTAGAAACGTGGCATCCTGACATT 3350 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 ||||| || | || | |||||| ||| |||||| | ||||| |||||| Sbjct 3351 TTTGATTTTATGGATTTAAAAAAAAATACTGGAAAAGAAGAAGTTCGTGCACGGGATTTA 3410 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG 110904 ||||||||| | ||| |||| ||| | || |||||| | ||| || ||||| Sbjct 3411 TTTTATGCACTTTGGGTTTCGGATCTTTTTATGAAAAGGGTTGAATCAAATG 3462 >seq178 Length=73968 Score = 118 bits (130), Expect = 3e-21 Identities = 329/499 (66%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 131800 AAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAG 131859 ||| ||||| || |||||| || ||||||| ||| | || ||| || | | Sbjct 5017 AAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATCTTCATTTGCTGAACG 5076 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 |||||||| ||||| ||||||||| ||||||||||| || |||||| | ||||| Sbjct 5077 TCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTT 5136 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 |||| | ||||| | ||| ||||||| ||| | | || ||||| || | || || | Sbjct 5137 TTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCG 5196 Query 131980 AGATGAAGCATTGCATACTGAATTTGC---TATATTAATCTATAGAAAATTTGCTGATAA 132036 |||||||| ||||||| ||| ||||| | | ||| || | | || | | | Sbjct 5197 AGATGAAGGATTGCATTGTGATTTTGCATGTCTCTTATTCACT--CATCTTCGTGCACGA 5254 Query 132037 ACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTT 132096 || | |||| | | | || ||||| ||||| ||| || || | || || Sbjct 5255 CCTCCAACAAAA-ACTGTAGAAGCTATTATAGCGGAAGCGGTTACAATAGAACAAGAATT 5313 Query 132097 TATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTA 132156 | | |||||||| || || ||||| ||||| ||||| || | | ||||| | || Sbjct 5314 TTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAATTTAATGAAAAAATA 5373 Query 132157 CATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATT-TATAACA 132215 |||||||| || |||||| | ||| | |||||| | ||| ||| ||||| Sbjct 5374 TATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGG-TGGAGCAAAATTGTATAATT 5432 Query 132216 CCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCG 132275 | | || || | | | ||||| | |||| | |||||||||| || ||||| | Sbjct 5433 CAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAGGTAAAACAAATTTCTTTG 5492 Query 132276 AAAGTCGTGTATCTGAGTA 132294 ||| || ||||| || || Sbjct 5493 AAAAACGCGTATCAGATTA 5511 >seq194 Length=170327 Score = 95.1 bits (104), Expect = 3e-14 Identities = 171/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 304894 TCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCATCTCAAAGA 304951 |||| |||||| | ||||||||||| || ||||| || | || |||| |||| | Sbjct 97058 TCATTGTGCAACTTATATGGATAATGAGATGGCTGGTCAACCA--CAAGCATTACAAAAA 97001 Query 304952 TCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGA 305011 ||||| ||||||||||| || || ||| | || |||||||| || ||| |||| Sbjct 97000 TCTGGTAGACCTTTAAAATCAATCAGAGCACGTCTCAAGGGTAAAGAAGGACGTCTTCGT 96941 Query 305012 GGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCT 305071 || ||||||||||| |||||||| || ||| ||| | | || || || ||| | Sbjct 96940 GGAAATCTAATGGGTAAACGTGTAGACTTTTCTGCTCGTACAGTCATTACGGGAGATCCG 96881 Query 305072 CAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCA 305131 | || | ||||| | |||||||||| || |||| ||| |||| ||||| Sbjct 96880 AATATATCAGTAGATGAAGTTGGAGTTCCAAAAAGTATAGCTTCAAATTTAACTTTTCCT 96821 Query 305132 GAGAAAGT 305139 || | ||| Sbjct 96820 GAAATAGT 96813 >seq362 Length=59027 Score = 93.3 bits (102), Expect = 1e-13 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||||| || |||| | ||| ||||| ||||||||||| ||||||||||| |||||| Sbjct 49958 ACTTTTCGTTTTAATGAATGTGTTTGTAGTCCTTATAATGCAGATTTTGATGGTGATGAA 50017 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| | |||||||||||| Sbjct 50018 ATGAATCTTCATGTACCTCAA 50038 >seq177 Length=77576 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 |||||| | ||||| ||||||||||| || || ||| |||| |||||| ||| || Sbjct 53713 GGTATTGCTAAACTGGATGATGCAAATAATGCCGGCGGTAAAAAATGTCAAGATTGTACT 53772 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 ||| | |||||||| || |||||||| | || || |||| || || ||| | || Sbjct 53773 TTAATCCTTACTGAAGGCGATTCTGCAAAGGCTTTGGCAGTTGCCGGATTTTCTATAGTT 53832 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241 |||||||| || ||||| || || || | | || ||| || | |||| | | ||| Sbjct 53833 GGTCGTGACAATTATGGAGTTTTCCCGCTTCGTGGGAAATTATTAAATGTTAGGGAT 53889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186656907688172