Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1195 120 3e-22 seq1291 118 1e-21 seq100 111 1e-19 seq1502 102 8e-17 seq1113 89.7 5e-13 seq1373 86.0 6e-12 >seq1195 Length=66079 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | |||||||||||||||| |||||||| | ||| || ||| || Sbjct 11907 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 11848 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||||| | || ||||| || |||||||| || || |||||||| || | Sbjct 11847 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 11788 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| ||| | || || | ||||||| | ||| ||||| | || | ||||| Sbjct 11787 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTT 11728 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | ||||| ||||| Sbjct 11727 CCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||||||||||||||| || || | |||||| ||||| || ||||| || | Sbjct 11438 TTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCAG 11379 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || ||||| || || ||||| || || |||||||| || ||||||| ||| | Sbjct 11378 CGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAA 11319 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||| |||| | || ||||| | || | || || || || || |||| Sbjct 11318 CTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTT 11259 Query 132108 TTATGAAAATCTGCATGA 132125 | | ||| || ||||||| Sbjct 11258 TAACGAAGATTTGCATGA 11241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| |||||||| ||||| || || | ||||| |||||| | || ||||| | Sbjct 12122 TTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAG 12063 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || | ||| || ||||||||||| || || |||||||| |||||| ||| | Sbjct 12062 CGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTAA 12003 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 ||| || | ||||| | | || || || | || | ||| |||||||| || |||| Sbjct 12002 CCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTT 11943 Query 132108 TTATGAAAATCTGCAT 132123 ||| ||||| ||||| Sbjct 11942 TTACAAAAATTTGCAT 11927 >seq1291 Length=36373 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| |||| ||||||||||| ||||| ||| | | ||| |||||| Sbjct 19794 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 19853 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||||||| | | | |||| ||| |||||||| || || || ||||||||||| | Sbjct 19854 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 19913 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||||| ||| | | || | |||||| | || ||||| | || | |||||| Sbjct 19914 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 19973 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| | ||||| |||||| Sbjct 19974 CCAGTAAGTGTTTTAACAAAAATTTGCATG 20003 >seq100 Length=143921 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||| ||||| || ||||| |||||| | |||||||| | Sbjct 59153 GATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCG 59212 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || ||||||||||| || || ||||||||||| ||| ||| ||| | Sbjct 59213 AAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTTGCTTTAACT 59272 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | ||||| | | ||| ||||| | || | |||||||| ||||| ||||| Sbjct 59273 TGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTA 59332 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 59333 ACGAAAATTTGCAT 59346 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||||||||| || || || || |||||| |||||| | |||||||| | Sbjct 59379 TTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAG 59438 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||||| || |||||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 59439 CGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAA 59498 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | |||||| | | ||| ||||| | || | ||||| ||||| || || | Sbjct 59499 CTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCT 59558 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| || ||||| Sbjct 59559 TGACGAATATTTGCAT 59574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || |||||||| || ||||| | ||||| |||||| | |||||||||| Sbjct 58695 TTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGG 58754 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | || ||||||||||| || || ||||| ||||| ||| ||| ||| | Sbjct 58755 CGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAA 58814 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || ||||| | Sbjct 58815 CTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCT 58874 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 58875 TGACGAAAATTTGCAT 58890 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||||||||| || || || || ||||| |||||| | |||||||| | Sbjct 58923 TTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGTTTACCAG 58982 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | || |||||||||||||| || ||||||||||| ||| || ||| | Sbjct 58983 CGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTCGTTTTTA 59042 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || || || | Sbjct 59043 CTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCT 59102 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 59103 TGACGAAAATTTGCAT 59118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || || || | ||||| |||||| | |||||||| | Sbjct 58469 GATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTGTTTACCAGCG 58528 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || || ||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 58529 AAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACT 58588 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | ||||| | | ||| ||||| | || | |||||||| || || || || Sbjct 58589 TGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTG 58648 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 58649 ACGAAAATTTGCAT 58662 >seq1502 Length=20690 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| || ||||| || || |||||| |||||| | |||||||||| Sbjct 12966 TTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGG 12907 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | || || ||||| || || ||||||||||| || ||| || ||| | Sbjct 12906 CAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAA 12847 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || ||||| | Sbjct 12846 CTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCT 12787 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 12786 TAACGAAAATTTGCAT 12771 >seq1113 Length=64455 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 131942 ATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGC 132001 || ||||| || || | ||||| |||||| || || ||||| | | | |||| | Sbjct 45649 ATATTGTAATCACTTAAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTT 45590 Query 132002 TGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTA 132061 ||||||||||| ||||| |||||||| || ||||||||| ||| || || || | ||| Sbjct 45589 TGTTGATCTGGTGGTATACCTTCTTTTTCAGTAATTTTTGTTTTTAATTGATCAATTGTA 45530 Query 132062 TCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 || | ||| ||||| | || || ||||| ||||| | ||||| Sbjct 45529 TCACTAAACTCGACTTCAATTGTTAGAGTTTTTCCAGTTAATGTTTT 45483 >seq1373 Length=28076 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 || || | |||||| ||||| || || ||||||| | || | ||||| || |||| Sbjct 4555 TTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAAGGT 4496 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 |||||| | |||||| ||| |||||||||| || | ||| |||||||| || | | Sbjct 4495 TCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCGAGC 4436 Query 147013 AACAATGAATTTCGCAGACC 147032 || ||||||||||| | ||| Sbjct 4435 AATAATGAATTTCGTACACC 4416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476550122274720