Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1195 136 4e-27 seq1113 129 5e-25 seq1291 107 2e-18 seq100 102 7e-17 >seq1195 Length=66079 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||| |||||| | || || | ||||| || | | Sbjct 11699 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 11758 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| ||||||||| ||| ||| || ||||| ||||| || || |||||| Sbjct 11759 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 11818 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||| |||||||| || |||| ||| | || |||||| Sbjct 11819 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 11878 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||| || || ||||||| ||| Sbjct 11879 ATTCAAAAAGAGTCAACACTTCATTTGGTG 11908 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||| ||| | ||||| ||| | ||||| | || || || || Sbjct 11471 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 11530 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| ||||||||| |||||| ||||| |||||||| || || || ||| Sbjct 11531 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 11590 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || || |||||||| || |||| ||| | ||| |||||| Sbjct 11591 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 11650 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||||||||| ||||| Sbjct 11651 ATTCAAAAAGAATCCACTCTTCAT 11674 Score = 120 bits (132), Expect = 3e-22 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 25164 AATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAG 25223 |||||| | ||||||| | || || ||||| | |||||||| | ||||| | |||| Sbjct 11232 AATTAACAATCATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAG 11291 Query 25224 TCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATAC 25283 | ||| | ||| ||||| || ||||| ||| ||||||| || ||||| || || | Sbjct 11292 TTGAATCTTCCGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTC 11351 Query 25284 CGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGT 25341 | || || |||||| | || |||| || ||||||||||| ||||| | | | | | | Sbjct 11352 CCCCAGACCAGCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTT 11411 Query 25342 CAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| || ||||||||||| || || ||||| |||| Sbjct 11412 CA--GATTATAACATTCAAAAAGAGTCAACTCTTCATCTAGT 11451 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||||||| | || || || |||| || | || |||||| | Sbjct 11927 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 11986 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || || || ||| |||||| |||||||||||||| || || |||||| Sbjct 11987 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 12046 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || || || ||| | ||||||| | | | | | ||||| || Sbjct 12047 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 12106 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || ||||||||||| || |||| Sbjct 12107 ATCCAAAAAGAATCAACTCTTCA 12129 >seq1113 Length=64455 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 25181 GTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACT 25240 |||| || ||||||||||| |||||| | | || || |||||||| | ||||| Sbjct 45474 GTGTACGTTAAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACA 45533 Query 25241 ATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGA 25300 || || ||| ||||| ||||||||| || ||||| |||||||| || ||||| |||||| Sbjct 45534 ATTGATCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGA 45593 Query 25301 CTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAA 25360 | |||| | || || ||||| ||||||| | | | | || ||||||||||| Sbjct 45594 TTAATTTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGT 45653 Query 25361 AAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| | |||||||| |||||||| || || || Sbjct 45654 GTTGAGTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG 45694 >seq1291 Length=36373 Score = 107 bits (118), Expect = 2e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | ||||| |||||| | || || ||| | || || | ||||| ||| Sbjct 20005 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 19946 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 | |||||| ||||| |||| ||| |||||||| |||||||| || || || || ||| Sbjct 19945 AGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGAT 19886 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATT 25349 || ||| | | || | | || ||||| | ||||||| | | | || ||||| Sbjct 19885 CAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTC--CGATT 19828 Query 25350 ACAATATTCAAAAAGAATCCAC 25371 ||||||||||||||||||| || Sbjct 19827 ACAATATTCAAAAAGAATCAAC 19806 >seq100 Length=143921 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | |||||||| || Sbjct 59118 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 59059 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||||||| || ||| |||||||| ||||| || || ||||| Sbjct 59058 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 58999 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | |||||| |||| | Sbjct 58998 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAG--ATTATA 58941 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||||||||||||||| || Sbjct 58940 ATATTCAAAAAGAATCAAC 58922 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | ||||| | ||||| || || Sbjct 59346 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 59287 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| |||||||| ||||| || || ||||| Sbjct 59286 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 59227 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | |||||| | || | Sbjct 59226 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAG--ACTATA 59169 Query 25353 ATATTCAAAAAGAATCCAC 25371 | ||||||||||||||||| Sbjct 59168 ACATTCAAAAAGAATCCAC 59150 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | || || | |||||||| |||| Sbjct 59574 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 59515 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || ||||| ||| ||| ||| ||||| || || || || || ||||| Sbjct 59514 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 59455 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT--GTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | ||||| |||| | Sbjct 59454 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAG--ATTATA 59397 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||||||||||||||| || Sbjct 59396 ATATTCAAAAAGAATCAAC 59378 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | ||||| || || Sbjct 58662 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 58603 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| ||||| || ||||| || || |||||| Sbjct 58602 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 58543 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || || |||||| | ||||||| | | | | ||||| ||| Sbjct 58542 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAAT 58483 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||||||||| || Sbjct 58482 ATTCAAAAAGAATCTAC 58466 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | |||||||| || Sbjct 58890 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 58831 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| ||||| || ||||| || || ||||| Sbjct 58830 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 58771 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || ||| |||||| | ||||||| | | | | || || ||| Sbjct 58770 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 58711 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 58710 ATTCAAAAGGAATCAAC 58694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445037361152640