Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1502 143 3e-29 seq1195 143 3e-29 seq100 138 1e-27 seq1291 127 2e-24 >seq1502 Length=20690 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || | |||||| || || || || |||||||| || ||||| || | | Sbjct 12997 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 12938 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | || || | ||||| || ||||| ||||| || |||||||| || || Sbjct 12937 AA-GGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 12879 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| |||||||| || ||| || ||| | || || || || || || Sbjct 12878 AATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 12819 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||||||||| | ||| ||||||||||||||||| Sbjct 12818 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 12771 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||||||||| ||||||||||| | || ||||| || || || |||||||| |||||||| Sbjct 13145 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 13086 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 ||| ||||| || | ||| || || ||||| || || |||||||| ||||| || Sbjct 13085 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 13026 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | || || || ||||| ||||| Sbjct 13025 GGTGAGGGTCTTTACAAAAATCTGCAT 12999 >seq1195 Length=66079 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| | || || || || || || || ||||||||||| || || | Sbjct 11469 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 11410 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || || |||||||| || ||||| | ||| ||||| || || || Sbjct 11409 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 11350 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||||||| ||| || ||| | |||||||| ||||| || Sbjct 11349 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 11290 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| | ||||||||||| |||||||| Sbjct 11289 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 11243 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || || |||||||| |||||||| || ||| | || || || ||| Sbjct 11901 TGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCAAGTTGT 11842 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || ||||| | ||| |||||||| || || || |||||||| |||||||| ||| Sbjct 11841 TTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGAATCTTT 11782 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || ||||| || || || || | |||||||||||| || ||| Sbjct 11781 GCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTTCCAGTT 11722 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||||||||| ||||||||||| Sbjct 11721 AGAGTTTTAACAAAAATTTGCAT 11699 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || ||||| ||||| ||||| || || | Sbjct 12153 CCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAA 12094 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | || || || || ||||||||||| |||||||| || || Sbjct 12093 AGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGG 12034 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||||||||| ||| ||| || | || || || ||||| || Sbjct 12033 ATACCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACC 11974 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| || | ||||| || ||||||||||| Sbjct 11973 TCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 11927 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || |||||||| |||||||| ||||||||| || ||| | || || Sbjct 11679 ACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCA 11620 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||| || || ||||| | ||| ||||| || || || || || || || |||||| Sbjct 11619 AGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGA 11560 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| ||| || ||| | || || || || || ||||| | || |||||||| Sbjct 11559 ATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTG 11500 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| |||||||| Sbjct 11499 CCGGTGAGTGTCTTTACGAAGATTTGCAT 11471 >seq100 Length=143921 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || | ||||| || || |||||||| ||||||||||| ||||| | | Sbjct 59120 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 59179 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || || || | ||||| || || || ||||| || || ||||| || || Sbjct 59180 AATG-TACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGG 59238 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| |||||||| ||| ||| || ||| | || || || || || || Sbjct 59239 GATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 59298 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| | |||||||||||||||||||| Sbjct 59299 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || | ||||| || || || |||||||||||||| || ||||| Sbjct 58664 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 58723 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | ||||| || || || ||||| || || ||||| || || Sbjct 58724 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 58783 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| ||| ||| || || | || || || || || || Sbjct 58784 ATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACT 58843 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||||||||| | ||| || |||||||||||||| Sbjct 58844 TCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 58890 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || | ||||| || || || ||||| |||||||| || || || | | Sbjct 58892 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 58951 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 |||| | || || || | ||||| || || || ||||| || || ||||| || || Sbjct 58952 AACG-TACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGG 59010 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| |||||||| || ||| || || | || || || || || || Sbjct 59011 GATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGAC 59070 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||||||||| | || || |||||||||||||| Sbjct 59071 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 59118 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || ||||| |||||||| || || || | || | || || Sbjct 58454 ACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCC 58513 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | ||||| || || || ||||| || |||||||| || || || ||||| || |||||| Sbjct 58514 AATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGA 58573 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||| ||| || ||| | || || || || || || || || ||||| |||||| Sbjct 58574 ATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTA 58633 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || |||||||||||||| Sbjct 58634 CCGGTGAGGGTCTTGACGAAAATTTGCAT 58662 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 134610 CCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCG 134669 |||||||| ||||| |||||| ||||| ||| | || || || ||||| || ||| Sbjct 59893 CCTTCTTTATCTTGGATTTTTGCCTTGACTTGGTCAATAGTATCTGAAGATTCAACTTCG 59952 Query 134670 AGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||||||||| || ||||| | ||| || ||||| |||||||| || Sbjct 59953 AGAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATGTT 59999 >seq1291 Length=36373 Score = 127 bits (140), Expect = 2e-24 Identities = 155/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCG----TCGA 134565 ||||| || ||||| |||||||| ||||| ||| || |||| ||| || | Sbjct 19799 GTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAA----GTGAACGTCCATCTTCTA 19854 Query 134566 GCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAA 134625 |||||| || ||||| || ||||| || ||||| || || || |||||||| ||||||| Sbjct 19855 ACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAA 19914 Query 134626 TTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTAC 134685 |||||| |||||| || | || ||| ||| || || | |||||||||||||| Sbjct 19915 TTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTAC 19974 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 | || | |||||||| ||||||||||| || Sbjct 19975 CAGTAAGTGTTTTAACAAAAATTTGCATGTT 20005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505333633195040