Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1373 428 6e-115 seq178 188 1e-42 seq452 105 9e-18 >seq1373 Length=28076 Score = 428 bits (474), Expect = 6e-115 Identities = 697/989 (70%), Gaps = 16/989 (2%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA-CACATCAATG 69574 ||| |||||||| ||||||||||| || |||||| |||| ||| || || || Sbjct 3530 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 3471 Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 ||| ||||| | ||| | ||||||||| ||||| | || |||||| || || Sbjct 3470 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 3412 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | | ||| | | | | |||||| ||||| ||||||||||| | ||| | ||| || | Sbjct 3411 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 3352 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| ||||||| Sbjct 3351 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 3292 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 | ||||| | ||||| ||||| |||||||| || | | ||| |||||||| ||||| | Sbjct 3291 CTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTG 3232 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 | | |||||||||||||| ||||||| |||| | || ||||| ||| ||| | || Sbjct 3231 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 3172 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || || ||||| | ||||| || | || || |||||| || ||||| || |||| Sbjct 3171 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 3112 Query 69935 CTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA-GT 69992 |||| ||||||| |||| ||||| ||||||||| || || | |||| | | || || Sbjct 3111 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGG-TCTAGGTGT 3054 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTA 70052 || |||||||| || || |||||||||||||| || | ||||| || | ||||||||| Sbjct 3053 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 2994 Query 70053 TGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACA 70111 ||||||||||| | ||| ||||| | | | ||||| || | ||| || ||||| | || Sbjct 2993 AGTTTCAATAGCAGCTTCGATATCATCTCCG-TGAATCCCAACCGCTACGCGCATAAGCA 2935 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 |||| || || || || | ||| | |||| || || || ||| |||| |||| Sbjct 2934 TATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAG 2875 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 ||||||| |||||||| || ||| | | ||||| || ||||| || |||||| |||| Sbjct 2874 TTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTT 2815 Query 70232 TATCCTTATATTTGGTAACTATATCCATAACAGTAGGT---GAGATAATCGGAGATCGTT 70288 | ||| || || | || |||| || ||| | || || || | | |||| Sbjct 2814 TTTCCGAATTGTTCATCACAATAT---TATAAGTTTTTTCAGAAATCATTGACGCGCGTT 2758 Query 70289 TACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttt 70348 | || |||| ||||| | ||| || | | |||||| | |||| ||| | ||||| Sbjct 2757 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 2698 Query 70349 ttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGAT 70408 | ||||| || || | ||| || | || || | || || || | |||||||| |||| Sbjct 2697 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 2638 Query 70409 GTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTA 70467 ||| || || || || || || |||| ||||| || |||||||||| | ||| || Sbjct 2637 GTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 2579 Query 70468 ACTCCGTTATATAGCCCTTGAATAACTTT 70496 || || | ||| | ||| ||| || || Sbjct 2578 ACACCTTGATAAACTCCTGAAATGACCTT 2550 Score = 178 bits (196), Expect = 2e-39 Identities = 278/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766 || ||||| ||||||||||| |||| | || | || |||||| || || ||||| Sbjct 4558 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 4499 Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826 ||||| | | |||||||| |||| ||||| | ||| |||||||| ||||| ||||| Sbjct 4498 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 4439 Query 68827 ACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCC 68886 | |||||| ||||| | ||||||| | ||||| | ||| | ||||||||| Sbjct 4438 AGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATCC 4379 Query 68887 CAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATAT 68946 || | ||||| || |||||||||| | ||||||||||| ||| || || | | Sbjct 4378 CATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGGT 4319 Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||| | ||||| || || | || | ||||||||| ||| |||||| Sbjct 4318 GATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAAT 4259 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| | ||| ||||| || || || | |||||| || || | ||| || | ||| Sbjct 4258 GCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGAATCA 4199 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 ||| || | | | | || || | |||||||||||| Sbjct 4198 AATTGAATACGCATAGCAAGGAAAGTATCTGCCAATCC 4161 Score = 105 bits (116), Expect = 9e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 ||||||||| || ||||| | || | ||||| || || || |||| | | | Sbjct 3862 AACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGA 3803 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| | ||||||||||| | ||||||||||||||| || || |||||||| ||||| Sbjct 3802 ATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATT 3743 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 | || ||||| | || ||||| || ||| | || ||||| ||||| ||||| || Sbjct 3742 AGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGA 3683 Query 69435 TTCGATAATAGATTTCCAAAC 69455 ||| | ||| | | |||| || Sbjct 3682 TTCAAGAATTGCTGTCCAGAC 3662 >seq178 Length=73968 Score = 188 bits (208), Expect = 1e-42 Identities = 208/275 (76%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||| Sbjct 4853 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4794 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | |||||| || || || ||| | |||| | ||||||||||| || || ||||| Sbjct 4793 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4734 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA--- 40084 |||||||| || ||||| || || |||||| ||||||| || | | |||| Sbjct 4733 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATAC 4674 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 | ||| ||||| ||||| || || | || ||||| ||| | |||||||| || || || Sbjct 4673 TCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTCG 4614 Query 40145 GCCTTTTTGTACATGTTCCATATAT-CACGATATT 40178 |||||||||||||| | ||| || | ||| ||||| Sbjct 4613 GCCTTTTTGTACATTTGCCAGATCTACACAATATT 4579 Score = 141 bits (156), Expect = 1e-28 Identities = 310/457 (68%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||| |||||| || || |||||||| || || ||||| ||||| |||| Sbjct 5530 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5471 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || ||||| |||||||| ||||| || |||||| |||| || Sbjct 5470 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACC 5411 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTCACAAT 39491 | | | | |||||||| || |||||||| || ||| ||||||| | ||| | | Sbjct 5410 AAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG-T 5352 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 |||| || || | |||||||||| || || |||| ||| |||| ||| || || | Sbjct 5351 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 5292 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGA--TGCAATAA-ATGTTTAA 39608 | || | ||| || | | ||| | | | | || || |||| || ||| | | Sbjct 5291 CTTCCGCTATAATAGCTTCTAC-AGTTTTTG--TTGGAGGTCGTGCACGAAGATGAGTGA 5235 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 | | | || || || |||||||| | || ||||||| | ||||| |||||| |||| Sbjct 5234 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 5175 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 | || | ||| ||||| | || | || || | |||||| || | || |||| ||||| Sbjct 5174 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 5115 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||| || ||||| || || ||||| || ||||| Sbjct 5114 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 5078 >seq452 Length=54095 Score = 105 bits (116), Expect = 9e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 ||||||||| |||| | | | ||| ||||| |||||||| | | || || ||| Sbjct 32564 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 32505 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||||| || || ||| ||| ||||| || |||| || || | | ||| || |||||| Sbjct 32504 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 32445 Query 70060 ATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 ||||||| || ||||| | ||||||||| || | |||||||||||||| || || Sbjct 32444 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 32385 Query 70120 GGTCGTTCTAC 70130 |||| ||| || Sbjct 32384 GGTCTTTCAAC 32374 Score = 86.0 bits (94), Expect = 9e-12 Identities = 183/272 (67%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 |||||||||||||| || ||||||||||||||| ||||||||||| ||| || Sbjct 33692 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 33633 Query 69184 ATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 69242 | |||||| | ||| | || |||||| | | || | || || | |||||||| Sbjct 33632 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 33573 Query 69243 -TCGTCCATCT----ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCT 69297 | || || | ||||||| || | || | || |||| ||||||||| ||| Sbjct 33572 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 33513 Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 || |||| | | ||||| | || || ||||||| |||| ||| | ||||| Sbjct 33512 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 33453 Query 69358 CCCAGATTTTGCTGATTACTCTTTTTGTTACA 69389 || ||||| | |||||| |||| ||||| Sbjct 33452 CCAAGATTCTTTTGATTAGATTTTTCATTACA 33421 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 70343 GtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGT 70402 ||||||||||||||||||||||||| || || || ||||| || || | ||||||||| | Sbjct 31998 GTTTTTTTGTTTCCTTGTGTAAATTAGAAATTGCAATTCTTGCCGCCAAAATAGCATAAT 31939 Query 70403 CAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAG 70462 ||||||| | ||| | || || |||| || ||||| |||| | ||| | || Sbjct 31938 CAGGATGATTACAAGTTAGATATGCAGCAGTTTCAGCCGCTAAATTATCAAGTTCCACAG 31879 Query 70463 TTGTAACTCCGTTATA 70478 | || || || | ||| Sbjct 31878 TGGTGACACCCTGATA 31863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686820772637280