Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq178 232 5e-56 seq49 113 4e-20 >seq178 Length=73968 Score = 232 bits (256), Expect = 5e-56 Identities = 353/501 (70%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA------TTCTTTTGGAGAACGA 44131 ||||| || ||||| ||| |||||| ||| || | ||| |||| ||||| Sbjct 5021 AAAGCGGATTGGGCTCTTCGATGGAT---TTCCGATAAGGAATCTTCATTTGCTGAACGT 5077 Query 44132 CTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTT 44191 ||||| |||||||| | ||| ||||| || |||||||| ||| | || ||| | || ||| Sbjct 5078 CTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTTT 5137 Query 44192 TGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGT 44251 |||||||||||| |||| ||||||| || || || ||||| || || |||| ||| Sbjct 5138 TGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCGA 5197 Query 44252 GATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAG-ACGATAA 44310 |||||||| || ||||| |||||||| || | ||| | |||| | | |||| Sbjct 5198 GATGAAGGATTGCATTGTGATTTTGCATGTCTCTTATTCACTCATCTTCGTGCACGA--- 5254 Query 44311 GCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATT 44370 ||| || || || | || |||| | | || || || | |||||||||||||| Sbjct 5255 -CCTCCAACAAAAACTGTAGAAGCTATTATAGCGGAAGCGGTTACAATAGAACAAGAATT 5313 Query 44371 TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATA 44430 | | ||| ||||||||| || |||||||| || ||||| | ||| ||||| |||| Sbjct 5314 TTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAATTTAATGAAAAAATA 5373 Query 44431 TATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGT 44490 |||||||| | || ||| | ||| | ||| ||| ||| | | ||| |||| | Sbjct 5374 TATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGGTGGAGCAAAATTGTATAATTC 5433 Query 44491 ACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGA 44550 | | || || |||||||||||||| ||| || |||| |||||||| || ||||| Sbjct 5434 AGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAGGTAAAACAAATTTCTTTGA 5493 Query 44551 AAAACGCGTTGGAGAATATCA 44571 ||||||||| ||| ||||| Sbjct 5494 AAAACGCGTATCAGATTATCA 5514 Score = 138 bits (152), Expect = 9e-28 Identities = 209/294 (71%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||||||||||||||| || | || ||||||||||| | || |||||||| | Sbjct 4591 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCATTTTGGACTGTTGAGGAAGTTGACCTT 4650 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAA---AACCAC-AAGAAAAACATTTTATATC 43845 | || || | ||||| | || || ||| | |||||||| ||||| || Sbjct 4651 TCCAAGGATATGAATGATTGGGA-GTATAAACTTAACGATGAAGAAAAATTCTTTATTTC 4709 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 | |||||||| || ||||| || || || || |||||||||||||| || || Sbjct 4710 TCACGTTTTGGCCTTCTTTGCCGCCTCGGATGGTATTGTCAATGAAAATTTAGTGGAACG 4769 Query 43906 GTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCAT 43965 ||| | ||||| ||| | ||||||||| ||||||||||||| ||||| || || Sbjct 4770 TTTTAGTAATGAAGTCCAAATTCCAGAAGCAAGATGTTTTTATGGATTTCAGATCATGAT 4829 Query 43966 AGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 |||||||| ||||| ||||||||| || |||| ||| | || ||||| || Sbjct 4830 CGAAAATATCCATTCAGAAATGTACTCCCTCTTGATTGATTCTTATATCAAGGA 4883 >seq49 Length=212187 Score = 113 bits (124), Expect = 4e-20 Identities = 253/377 (67%), Gaps = 5/377 (1%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAAC---TG 41105 |||||||| ||||| |||||| |||| || || || || || | ||| || | Sbjct 169677 ATGGCATTACCACCATGTCATATGTTTTGCCAATTCTATGTATCAAATACGAAAAGATTA 169618 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || |||| | |||||||||||| |||| | ||||| || || || |||||||| || Sbjct 169617 TCGTGTCTTCTTTATCAAAGATCATGTGATGTTGGACTTGGTGTACCATTTAACATTGCA 169558 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTT 41225 || |||||| | | || |||||||||| || || || || | |||||||||||| Sbjct 169557 AGCTATGCTATATTAACTCATATGATTGCTCATGTAACGGGTTGTAGTCCTGGTGAATTT 169498 Query 41226 GTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAA 41285 |||| || | || ||| ||||| || | | |||| || | | |||| | ||| Sbjct 169497 ATTCATACCATGGGTGATACTCATATATATAATGATCATATTAATGCTTTAAAAACTCAA 169438 Query 41286 CTGACACGAAAACCTAGACCATTTCCAACGCTACTTA-TTAAACGCGCTGTTGAAAACAT 41344 | ||| |||| | | ||||||| || | | ||| |||| || | || || Sbjct 169437 ATCGAACGTGAACCAAAAGCATTTCC-TCGTTTGAAATTTAGACGCAAAATTAATAATAT 169379 Query 41345 TGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCA 41404 |||||||||| ||||||||| | || | ||| | || | ||| ||||| | Sbjct 169378 TGATGATTTTAAATATGATGATTTTATTATTACTGGTTATGAACCTCATCCTCAAATCAA 169319 Query 41405 CATGGACATGTCTGTAT 41421 ||| | |||||||||| Sbjct 169318 AATGAAAATGTCTGTAT 169302 Score = 89.7 bits (98), Expect = 4e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 40736 AGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGG 40795 ||||||| | ||||||||||| |||||| ||| ||| || | ||| | |||| ||| Sbjct 170064 AGAAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGG 170005 Query 40796 AGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGA 40855 | || |||||| | | | ||||| ||||||| || || || || | | Sbjct 170004 TATTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACA 169945 Query 40856 TAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGC 40912 ||| | ||||||||| | ||||||||||||||||| || | | |||||||||| || Sbjct 169944 TAGAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGC 169888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397406339363260