Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1373 120 3e-22 seq1291 120 3e-22 seq1195 113 4e-20 seq100 89.7 4e-13 >seq1373 Length=28076 Score = 120 bits (132), Expect = 3e-22 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 130754 TTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGT 130813 |||| |||||||| || ||||| || || |||| ||||||||||||||| | ||| Sbjct 4555 TTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAAGGT 4496 Query 130814 TCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACT 130873 ||||| |||| || ||| |||||||| | |||| ||| || ||||| ||| | Sbjct 4495 TCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCGAGC 4436 Query 130874 AATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCAT 130933 |||| ||||| || | ||| || | |||||| | ||||| || |||||||||| Sbjct 4435 AATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATCCCAT 4376 Query 130934 AGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTT 130983 | | ||||| | ||| ||||||||||| |||||| |||||||| Sbjct 4375 AAATCAGTAGGCTCAACA---TTCCACATATCGTATTGTAAAATGCCTTT 4329 >seq1291 Length=36373 Score = 120 bits (132), Expect = 3e-22 Identities = 175/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| || || | |||||| ||||| || || ||||||||||||||||| ||| Sbjct 19775 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 19834 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | ||||| | ||||||||| || | || | ||| ||||||||||| || Sbjct 19835 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 19894 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| || || | ||| | | || | || || | |||||| Sbjct 19895 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 19954 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 ||||| ||| || | ||| || || || ||||| ||||| |||||||| | | ||||| Sbjct 19955 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT-GTTTAAAAAAA 20013 Query 27260 TTTATT 27265 |||||| Sbjct 20014 TTTATT 20019 >seq1195 Length=66079 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || |||||||||||||||||||| | | | || | || || Sbjct 11907 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 11848 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||||||| |||||||||| || ||||| || || | ||| ||||| || Sbjct 11847 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 11788 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | || | || || | | |||||||| | ||| || | ||| Sbjct 11787 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTT 11728 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||||||| ||||| ||||||||| Sbjct 11727 CCAGTTAGAGTTTTAACAAAAATTTGCATA 11698 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||||||||||||| | | | || | || || || |||||||| Sbjct 11667 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCA 11608 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||||||||| || || || || || | |||||| ||||| || ||| |||| Sbjct 11607 GCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTT 11548 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | || | || || | || || || || | || || | |||||| || || || Sbjct 11547 ACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGTGTC 11488 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || |||||||||||| || Sbjct 11487 TTTACGAAGATTTGCATACCT 11467 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||| | ||| | || || ||||||||||| || || || Sbjct 11469 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 11410 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| || ||||| || ||| |||| ||||| || || || || || Sbjct 11409 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 11350 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||| | || | |||||| | | ||||||| Sbjct 11349 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 11290 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAAT 27260 || || || || | || || || || ||||| || ||||||||||| || ||| || Sbjct 11289 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGATTGTTAATTAT 11230 Query 27261 TTATTAAA 27268 | |||||| Sbjct 11229 TAATTAAA 11222 >seq100 Length=143921 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || | ||| | ||| | || || ||||||||||| || ||||| || | || Sbjct 59129 AAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGA 59188 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | |||||||| ||| | || | || |||||||| || || | ||| ||| Sbjct 59189 CCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCT 59248 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| ||||| ||| | |||| || || | || || ||||| ||||| Sbjct 59249 TTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTG 59308 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || ||||| ||||| || || ||||||||| Sbjct 59309 ATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 59347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCG 27088 || || | ||| | ||| | || || || ||||||||||| ||||| | | | || | Sbjct 58673 AAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGG 58732 Query 27089 CTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTC 27148 | | ||||| | |||||||||||| | || | || |||||||| || || | ||| || Sbjct 58733 C-CATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTC 58791 Query 27149 TTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGT 27208 ||||| ||||| ||| | |||| || || | || || ||||| ||||| Sbjct 58792 CTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGT 58851 Query 27209 TATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || || ||||| || || || ||||||||| Sbjct 58852 AATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCATA 58891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || | ||| | ||| | || || |||||||||||||| || || || | || Sbjct 58901 AAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGA 58960 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | |||||||| ||| | || | || |||||||| || || | ||| ||| Sbjct 58961 CCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCT 59020 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| ||||| |||| | |||| || || | || || ||||| ||||| Sbjct 59021 TTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTA 59080 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || || || || || || || ||||||||| Sbjct 59081 ATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 59119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424881306040224