Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq452 84.2 3e-11 seq178 84.2 3e-11 >seq452 Length=54095 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| ||||| ||||||| ||||| || | || || |||||||| | || |||||| Sbjct 32377 GAAAGACCACAACACATGTTGATGCGTGTTTCTATTGGAATTCATGGTTATGATATTGAT 32436 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 104334 | | | || || || | |||||| | | ||| || | ||| |||| ||||| Sbjct 32437 GCAGCTATTGAAACTTATAATTTAATGTCCGAGAAATATTTT-ACTCATGCAAGTCCAAC 32495 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 | || |||||||||||||||||||| |||||||| || ||||| Sbjct 32496 TTTGTTTAATGCTGGTACACCAAGACCACAAATGTCAAGCTGCTT 32540 >seq178 Length=73968 Score = 84.2 bits (92), Expect = 3e-11 Identities = 326/502 (65%), Gaps = 14/502 (3%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 ||| || || |||| ||| ||||||||||||||| | ||| || |||| | || Sbjct 5002 AGTCCCTTGCATTCGAAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATC 5061 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 ||| |||||||| || || | || ||||| |||||| || || ||||| ||||| Sbjct 5062 ---TTCATTTGCTGAACGTCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGG 5118 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | ||| ||| | || | |||| | ||||| |||| | |||||||| | || | Sbjct 5119 AGCTTTC-GCGTCAATCTTTTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTT 5177 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCA 94969 ||||||| || || ||||| || || ||| | || || ||||| || ||| | Sbjct 5178 CCAACGAACTAATTTCTCGAGATGAAGGATTGCATTGTGATTTTGC-ATGTCTCTTATTC 5236 Query 94970 AATTAT-TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTT 95028 | | || | ||| ||| | || | ||| | | ||||| | |||||| ||| Sbjct 5237 ACTCATCTTCGTGCACGACCTCCAACAAAAACTGTAGAAGCTATTATAGCGGAAGCGGTT 5296 Query 95029 GAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCT 95088 || || ||| ||| || || || | ||| | | || |||||||| | Sbjct 5297 ACAATAGAACAAGAATTTTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCG 5356 Query 95089 GAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTT-GAAGCAGATCGGGGT 95147 | |||| |||||||||| | |||| |||||||||| || | ||| | | || Sbjct 5357 AATTTAATGAAAAAATATATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGGTGGA 5416 Query 95148 GCCTCCAATT-TGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACG 95206 || |||| | || || ||||||| ||||| || ||||| ||||| | | | Sbjct 5417 GC--AAAATTGTATAATTCAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAG 5474 Query 95207 GGAAGACAAACTTCTTCGAAAA 95228 | || ||||| ||||| ||||| Sbjct 5475 GTAAAACAAATTTCTTTGAAAA 5496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583186055128480