Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1195 122 5e-23 seq1502 114 8e-21 seq1291 114 8e-21 seq100 114 8e-21 >seq1195 Length=66079 Score = 122 bits (134), Expect = 5e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | ||| ||||| ||| ||||||||||||||||||||| Sbjct 11469 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 11410 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||||||||||||||| || || || || | ||| || ||||| || || Sbjct 11409 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 11350 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| || |||||| ||| ||||| |||||| | | ||| ||||| || | Sbjct 11349 ATTCCTTCTTTGTCT-TGAATTTTTGCTTTAACTTGGT-CAATAGTGTCGGAAGATTCAA 11292 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || ||||| | ||||| || || || |||||| Sbjct 11291 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 11242 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||| || || ||| |||||||| || || || ||| Sbjct 11925 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 11866 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || ||||||||||||||||| || || | ||| || || || || || Sbjct 11865 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 11806 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||||| ||||| ||| || || || ||| || Sbjct 11805 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGAT-CGATGGTATCGGAAGACTCAAC 11747 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || |||| ||||| |||||||| ||||| Sbjct 11746 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 11699 Score = 105 bits (116), Expect = 4e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||| |||||| || |||||||| || || || ||| Sbjct 11697 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 11638 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || |||||||||||||| || || || | ||| || ||||| || || Sbjct 11637 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 11578 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | |||||||| ||| ||| ||| ||||| || | | || || || | ||| | Sbjct 11577 ATACCCTCCTTATCT-TGAATTTTGGTTTTTACTTGGT-CGATGGTATCCGAGGACTCTA 11520 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || ||||| ||||| | || || || || || ||||| Sbjct 11519 CGTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 11471 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||| ||||||||||| ||||| || || | ||||| | ||| ||||| || || Sbjct 12117 TCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAA 12058 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--G 34633 || ||||| || || || || || | ||||| || ||| ||| ||| |||||||| | Sbjct 12057 ATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT-TGAATTTTGGTTTTAACCTG 11999 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| || || || || || | ||| ||||| ||||| || | ||||| | Sbjct 11998 AT-CAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTA 11940 Query 34694 CAAAAATCTGCAT 34706 ||||||| ||||| Sbjct 11939 CAAAAATTTGCAT 11927 >seq1502 Length=20690 Score = 114 bits (126), Expect = 8e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | ||| | ||||||||| ||||||||| || || |||||||| Sbjct 12997 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 12938 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||||||||| || || || || || ||||| || Sbjct 12937 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 12878 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| ||| || | |||||| | | ||| || ||| | ||| | Sbjct 12877 ATGCCTTCTTTGTCT-TGAATCTTCGCTTTAACTTGGT-CAATGGTATCTGAGGACTCTA 12820 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 12819 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 12771 >seq1291 Length=36373 Score = 114 bits (126), Expect = 8e-21 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || |||||||| || ||||| ||||||| || | ||||| | |||||||| |||||| Sbjct 19812 TCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAAT 19871 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 |||||||| ||||| ||||| || | ||| || || ||| ||| |||| ||| || | Sbjct 19872 ATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCT-TGAATTTTTTCTTTGACTTT 19930 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || || || || || ||||| | || || |||||||| || | ||||| || Sbjct 19931 ATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAAC 19990 Query 34695 AAAAATCTGCATGTT 34709 |||||| |||||||| Sbjct 19991 AAAAATTTGCATGTT 20005 >seq100 Length=143921 Score = 114 bits (126), Expect = 8e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| || |||||||| ||||||||||| Sbjct 59348 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 59407 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || ||| | ||||| | ||||||||| || || ||||| || ||||| || || || Sbjct 59408 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 59467 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||| ||| ||| |||| |||||| ||| ||| || || | | ||| | Sbjct 59468 ATTCCTTCCTTATCT-TGAATCTTTGCTTTAACTTGAT-CAATAGTATCATTGGACTCGA 59525 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| || || | || || || || || ||||| Sbjct 59526 CTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 59574 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | |||||||||| || |||||||||||||| ||||| Sbjct 59120 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 59179 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||||||||| || || || || || ||||| || || || Sbjct 59180 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 59239 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || || ||| ||| |||| |||||| | | || || || | ||| | Sbjct 59240 ATACCTTCTTTATCT-TGAATCTTTGCTTTAACTTGGT-CTATGGTATCAGAGGACTCTA 59297 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | |||||| || ||||| ||||| Sbjct 59298 CTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 59346 Score = 102 bits (112), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| ||||||||||| ||||| || || Sbjct 58664 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 58723 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||||||| || || || || ||||| || || || Sbjct 58724 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 58783 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| ||| |||| |||||| ||| || || || | ||| | Sbjct 58784 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGAT-CTATGGTATCAGAGGACTCGA 58841 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 58842 CTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 58890 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||||||||| || |||||||| |||||||| || Sbjct 58436 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 58495 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| || || || || || || || || || || Sbjct 58496 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 58555 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| |||||| | |||||| | | | | || || | ||| | Sbjct 58556 ATACCTTCCTTATCTTGAATCTTT-GCTTTAACTTGGTCTA-TGGTATCAGAGGACTCAA 58613 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||||||||| | || || || ||||| ||||| Sbjct 58614 CTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 58662 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| || |||||||| ||||||||||| Sbjct 58892 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 58951 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| || || || || || ||||| || || || Sbjct 58952 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 59011 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || || ||| ||| || ||||| || ||| || || || | ||| | Sbjct 59012 ATACCTTCTTTATCT-TGAATCTTCGTTTTTACTTGAT-CTATGGTATCAGAGGACTCGA 59069 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 59070 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 59118 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| | || | ||| ||||| ||| || |||||||| ||||| || Sbjct 59576 CCACCTCTAAGACGGAGTACGAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGAT 59635 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | | || ||||||| | ||||| |||||||| ||||| || ||||| ||||| || Sbjct 59636 AAGCTACGTCCGTCTTCCAACTGTTTTCCGGCAAAGATTAAGCGTTGTTGATCCGGAGGA 59695 Query 34600 ACTCC 34604 | ||| Sbjct 59696 ATTCC 59700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314690275716716