Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1195 143 2e-29 seq1291 140 2e-28 seq1113 134 9e-27 seq1502 122 6e-23 seq100 122 6e-23 seq322 111 1e-19 seq768 89.7 3e-13 >seq1195 Length=66079 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||||| || ||||| || ||||| || |||||||| || | Sbjct 11243 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 11302 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | ||| ||||||| ||||||||||| | || ||||| || Sbjct 11303 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 11362 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || ||||||||||| ||||||| || || | ||||| ||| Sbjct 11363 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 11422 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| || | ||| |||| Sbjct 11423 ATTCAAAAAGAGTCAACTCTTCATCTAGT 11451 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || || |||||||| || ||| | |||||||| || | Sbjct 11699 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 11758 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | ||||| ||| ||| |||||||||||| | || |||||||| Sbjct 11759 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 11818 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| |||||||| || || | ||| || | || ||||| Sbjct 11819 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 11878 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| ||| | ||||| || Sbjct 11879 ATTCAAAAAGAGTCAACACTTCATTTGGT 11907 >seq1291 Length=36373 Score = 140 bits (154), Expect = 2e-28 Identities = 163/217 (75%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||| ||||| |||||||| || || || ||||| || ||| | |||||||| Sbjct 20008 TTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAA 19949 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | || || | || | | | ||| |||||||| || |||||||| | || || Sbjct 19948 AGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCG 19889 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCG 23782 |||||||| |||||||||||||| || ||||| | ||||| | ||| |||||| || Sbjct 19888 GATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCG 19831 Query 23783 ATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||| || |||||||| || |||||||| || || Sbjct 19830 ATTACAATATTCAAAAAGAATCAACATTACACTTGGT 19794 >seq1113 Length=64455 Score = 134 bits (148), Expect = 9e-27 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23622 CGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA 23681 ||||||||| | || |||||||| | || | ||||| || | | || || |||| Sbjct 45479 CGTTAAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACAATTGA 45538 Query 23682 AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAAT 23741 ||||||| ||||||| |||| ||||||||| |||| ||||||||||| | ||||| Sbjct 45539 TCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAAT 45598 Query 23742 ATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGA 23801 ||||| || || ||||| ||||| | || |||||| | |||||||| ||| || Sbjct 45599 TTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGTTGA 45658 Query 23802 GTCCACATTACATTTAGTTTTAAGGTT 23828 |||||| |||||||||| ||||| || Sbjct 45659 GTCCACGCTACATTTAGTATTAAGATT 45685 >seq1502 Length=20690 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || || || || ||||| || ||||| ||||| || ||| | Sbjct 12771 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 12830 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| || ||| ||||||||||| | || || ||||| Sbjct 12831 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 12890 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || |||||||| |||||| ||||||| | ||| || || |||||||| Sbjct 12891 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 12950 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 12951 ATCCAAAAGGAGTCAAC 12967 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || ||||| || ||||| |||||||| || | Sbjct 12999 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 13058 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || ||||| | | || ||| ||| |||||||||||| | || ||||||||| Sbjct 13059 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 13118 Query 23731 CAGCGTTTAATATTTGCCGGCAAACA 23756 || | || || ||||| |||||||| Sbjct 13119 CAAAGATTGATTTTTGCTGGCAAACA 13144 >seq100 Length=143921 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 59346 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 59287 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| ||| ||| || ||||||||| | || ||||||||| Sbjct 59286 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 59227 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || || |||||| | ||||| | || || || || || ||| Sbjct 59226 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAAC 59167 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| ||||| Sbjct 59166 ATTCAAAAAGAATCCAC 59150 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| || ||||| || ||||| ||||| || ||| | Sbjct 58890 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 58831 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| ||| ||| || || |||||| | || ||||||||| Sbjct 58830 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 58771 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || ||||| |||||| ||||||| | || |||||| || || || Sbjct 58770 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 58711 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 58710 ATTCAAAAGGAATCAAC 58694 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || ||||| || ||||| ||||| || ||| | Sbjct 59118 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 59059 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | ||||| || ||| || ||||||||| | || ||||||||| Sbjct 59058 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 58999 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || || |||||| | ||||| | || || || ||||| || Sbjct 58998 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAAT 58939 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 58938 ATTCAAAAAGAATCAAC 58922 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || ||||| || || || ||||| || |||| Sbjct 59574 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 59515 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| ||| ||| || || ||||| | || ||||||||| Sbjct 59514 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 59455 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || ||||| || || || |||||| ||||||| | || ||||| ||||| || Sbjct 59454 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 59395 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 59394 ATTCAAAAAGAATCAAC 59378 >seq322 Length=141587 Score = 111 bits (122), Expect = 1e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23709 AGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGA 23768 ||||||| |||| ||||||||||| ||||| | | ||||| |||||||| ||||| || Sbjct 130852 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 130911 Query 23769 ACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTT 23828 |||||||||| ||||| || |||||| | || || || |||||||||| ||||| || Sbjct 130912 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 130971 Query 23829 GCGAGGAGG 23837 |||| || Sbjct 130972 AAGAGGTGG 130980 >seq768 Length=116656 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 || || |||||||| || | || || ||||| || || || ||| | | | | || Sbjct 28841 CAAATATTCGTTAATACATTAACTGGTAAAACTATAACACTAGAATTAAATTTTAGTGAT 28900 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 || || | | ||||| |||||||| || |||||||| |||| ||||||||||| Sbjct 28901 ACAATTTATAACCTAAAAGAAAAAATTCAGGATAAAGAAGGGATACCTCCAGATCAACAA 28960 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 | ||| | ||||| || | ||| ||||| | || || ||| |||||||| ||| Sbjct 28961 AGATTAGTTTTTGCTGGTATGTTACTTGAAGATGGCCGTACGTTATCGGATTACAAGATA 29020 Query 23794 CAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| | |||||| ||||| | || || || Sbjct 29021 AAAAAACATTCCACAATACATCTGGTATTGAG 29052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337967366968016